RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 SPOPLQ6IQ16 392 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 TMEM150AQ86TG1 271 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 MFSD6LQ8IWD5 586 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 GOLGA5Q8TBA6 731 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 PARD3BQ8TEW8 1205 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 TASP1Q9H6P5 420 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 TRPC7Q9HCX4 862 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 LTB4R2Q9NPC1 389 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 CGNQ9P2M7 1197 aaKnown RBP13.39□□□□□ -0.27
SMAD3-208ENST00000558827 MAGEC2Q9UBF1 373 aaPredicted RBP13.39□□□□□ -0.27
SMAD3-208ENST00000558827 RIF1Q5UIP0 2472 aaKnown RBP13.38□□□□□ -0.27
SMAD3-208ENST00000558827 SHISA7A6NL88 538 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 PDXKO00764 312 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 CALUO43852 315 aaPredicted RBP13.38□□□□□ -0.27
SMAD3-208ENST00000558827 RHOBTB3O94955 611 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 C4BPAP04003 597 aaKnown RBP13.38□□□□□ -0.27
SMAD3-208ENST00000558827 TRIM49P0CI25 452 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 TRIM49CP0CI26 452 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 CDC25CP30307 473 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 GRIK1P39086 918 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 RPL10AP62906 217 aaKnown RBP13.38□□□□□ -0.27
SMAD3-208ENST00000558827 NUCB2P80303 420 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 PRKCQQ04759 706 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 TNK2Q07912 1038 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 SMARCB1Q12824 385 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 IFRD2Q12894 506 aaPredicted RBP13.38□□□□□ -0.27
SMAD3-208ENST00000558827 NCOA4Q13772 614 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 ZNF699Q32M78 642 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 FAM171BQ6P995 826 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 LIMS2Q7Z4I7 341 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 IRF7Q92985 503 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 CYP2S1Q96SQ9 504 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 GPR88Q9GZN0 384 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 SDCBP2Q9H190 292 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 XYLT2Q9H1B5 865 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 SPATA6Q9NWH7 488 aaPredicted RBP13.38□□□□□ -0.27
SMAD3-208ENST00000558827 DLGAP2Q9P1A6 1054 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 HSFX1Q9UBD0 423 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 CDH9Q9ULB4 789 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 CCL26Q9Y258 94 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 PIAS3Q9Y6X2 628 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 R4GN57 208 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 MIA3Q5JRA6 1907 aa13.38□□□□□ -0.27
SMAD3-208ENST00000558827 A8MXQ7 604 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 CSH1P0DML2 217 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 CSH2P0DML3 217 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 PTPN1P18031 435 aaKnown RBP13.37□□□□□ -0.27
SMAD3-208ENST00000558827 NR2F2P24468 414 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 CCNE1P24864 410 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 KPNA1P52294 538 aaPredicted RBP13.37□□□□□ -0.27
SMAD3-208ENST00000558827 CACNA2D1P54289 1103 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 USP46P62068 366 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 C1orf220Q5T0J3 134 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 ZNF852Q6ZMS4 543 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 DPH6Q7L8W6 267 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 SLC9A9Q8IVB4 645 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 FMR1NBQ8N0W7 255 aaPredicted RBP13.37□□□□□ -0.27
SMAD3-208ENST00000558827 CSGALNACT1Q8TDX6 532 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 DEPDC1BQ8WUY9 529 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 PCED1BQ96HM7 432 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 SLC22A12Q96S37 553 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 DDX23Q9BUQ8 820 aaKnown RBP13.37□□□□□ -0.27
SMAD3-208ENST00000558827 BCO2Q9BYV7 579 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 ZNF518BQ9C0D4 1074 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 TRPV4Q9HBA0 871 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 GTSE1Q9NYZ3 720 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 FRMD4BQ9Y2L6 1034 aa13.37□□□□□ -0.27
SMAD3-208ENST00000558827 ATG2BQ96BY7 2078 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 GFRA3O60609 400 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 GADD45BO75293 160 aaPredicted RBP13.36□□□□□ -0.27
SMAD3-208ENST00000558827 TADA3O75528 432 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 AKAP3O75969 853 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 FGF19O95750 216 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 ABL1P00519 1130 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 HLA-DRAP01903 254 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 MYL1P05976 194 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 GCLMP48507 274 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 VAMP7P51809 220 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 NUBP1P53384 320 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 ADAM9Q13443 819 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 ZNF667Q5HYK9 610 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 TRIM68Q6AZZ1 485 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 TSSK4Q6SA08 328 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 C4orf50Q6ZRC1 276 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 SV2AQ7L0J3 742 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 ASCL5Q7RTU5 278 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 C1orf210Q8IVY1 113 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 RIN3Q8TB24 985 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 BPIFB1Q8TDL5 484 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 FAM3CQ92520 227 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 MRPS31Q92665 395 aaKnown RBP13.36□□□□□ -0.27
SMAD3-208ENST00000558827 SYAP1Q96A49 352 aaPredicted RBP13.36□□□□□ -0.27
SMAD3-208ENST00000558827 MED10Q9BTT4 135 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 B3GNT5Q9BYG0 378 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 LMAN1LQ9HAT1 526 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 GKN1Q9NS71 199 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 RBM12Q9NTZ6 932 aaKnown RBP13.36□□□□□ -0.27
SMAD3-208ENST00000558827 TMEM30AQ9NV96 361 aa13.36□□□□□ -0.27
SMAD3-208ENST00000558827 KIF26AQ9ULI4 1882 aaPredicted RBP13.36□□□□□ -0.27
SMAD3-208ENST00000558827 DENND4CQ5VZ89 1909 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms