RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ARHGAP22Q7Z5H3 698 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 RNF148Q8N7C7 305 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 NETO2Q8NC67 525 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 CEP70Q8NHQ1 597 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 TMEM143Q96AN5 459 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 TTC25Q96NG3 672 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 NYAP2Q9P242 653 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 ANGPTL2Q9UKU9 493 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 PCDHB2Q9Y5E7 798 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 RTN3O95197 1032 aaPredicted RBP11.87□□□□□ -0.51
LDLR-208ENST00000558518 LYNP07948 512 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 TRAF1Q13077 416 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 TMED1Q13445 227 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 CEP128Q6ZU80 1094 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 SYDE1Q6ZW31 735 aaPredicted RBP11.87□□□□□ -0.51
LDLR-208ENST00000558518 USP37Q86T82 979 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 NUDCD3Q8IVD9 361 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 RIBC1Q8N443 379 aaPredicted RBP11.87□□□□□ -0.51
LDLR-208ENST00000558518 DENND1AQ8TEH3 1009 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 EBF3Q9H4W6 596 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 IFT122Q9HBG6 1241 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 KANSL3Q9P2N6 904 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 FAM198AQ9UFP1 575 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 STK24Q9Y6E0 443 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 MYOCOSA0A1B0GUC4 107 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 PRR5-ARHGAP8B1AHC4 643 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 KBTBD13C9JR72 458 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 LIN7AO14910 233 aaPredicted RBP11.87□□□□□ -0.51
LDLR-208ENST00000558518 CFLARO15519 480 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 SLC1A1P43005 524 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 ARHGAP8P85298 464 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 CDK16Q00536 496 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 DSG1Q02413 1049 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 LMNB2Q03252 620 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 CCDC15Q0P6D6 951 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 C11orf91Q3C1V1 193 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 ZBTB41Q5SVQ8 909 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 SPOCD1Q6ZMY3 1216 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 CDAN1Q8IWY9 1227 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 KCTD6Q8NC69 237 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 FEZF2Q8TBJ5 459 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 MBOAT7Q96N66 472 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 DLEC1Q9Y238 1755 aa11.87□□□□□ -0.51
LDLR-208ENST00000558518 UGT1A9O60656 530 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 LYPLA1O75608 230 aaPredicted RBP11.86□□□□□ -0.51
LDLR-208ENST00000558518 ANPEPP15144 967 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 TAF5Q15542 800 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 RAPH1Q70E73 1250 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 SPATA24Q86W54 205 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 TREML1Q86YW5 311 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.86□□□□□ -0.51
LDLR-208ENST00000558518 BSNDQ8WZ55 320 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 DDX1Q92499 740 aaKnown RBP11.86□□□□□ -0.51
LDLR-208ENST00000558518 FAF2Q96CS3 445 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 FAM163AQ96GL9 167 aaPredicted RBP11.86□□□□□ -0.51
LDLR-208ENST00000558518 NDNQ99608 321 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 IMPG2Q9BZV3 1241 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 UGT1A7Q9HAW7 530 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 UGT1A10Q9HAW8 530 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 UGT1A8Q9HAW9 530 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 KRT82Q9NSB4 513 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 GABBR1Q9UBS5 961 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 SLC9A2Q9UBY0 812 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 TJP2Q9UDY2 1190 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 MRPL11Q9Y3B7 192 aaKnown RBP11.86□□□□□ -0.51
LDLR-208ENST00000558518 IRS2Q9Y4H2 1338 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 DCAF8L1A6NGE4 600 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 CIITAP33076 1130 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 GMPRP36959 345 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 HADHBP55084 474 aaKnown RBP11.86□□□□□ -0.51
LDLR-208ENST00000558518 NLRP11P59045 1033 aaKnown RBP11.86□□□□□ -0.51
LDLR-208ENST00000558518 AP2B1P63010 937 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 WDR72Q3MJ13 1102 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 RALGPS1Q5JS13 557 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 OR52E8Q6IFG1 317 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 DENND5BQ6ZUT9 1274 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 UNC45BQ8IWX7 931 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 TMEM130Q8N3G9 435 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 EBF4Q9BQW3 602 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 TELO2Q9Y4R8 837 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 DDX60LQ5H9U9 1706 aaKnown RBP11.86□□□□□ -0.51
LDLR-208ENST00000558518 CLUHO75153 1309 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 LAMB1P07942 1786 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 PAPPAQ13219 1627 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 STAM2O75886 525 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 BBOX1O75936 387 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 NPTXRO95502 500 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 APRTP07741 180 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 ADRA2BP18089 450 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 NT5C2P49902 561 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 WNT7BP56706 349 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 COG7P83436 770 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 BST1Q10588 318 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 MMEL1Q495T6 779 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 SWSAP1Q6NVH7 229 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 SLITRK1Q96PX8 696 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 GCNAQ96QF7 691 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 CDCA7Q9BWT1 371 aaPredicted RBP11.86□□□□□ -0.51
LDLR-208ENST00000558518 COA1Q9GZY4 146 aa11.86□□□□□ -0.51
LDLR-208ENST00000558518 NAV1Q8NEY1 1877 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms