RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 MAPRE1Q15691 268 aaKnown RBP18.62■□□□□ 0.57
SHMT2-225ENST00000556798 SDHAF4Q5VUM1 108 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 PHLDB3Q6NSJ2 640 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 C4orf50Q6ZRC1 276 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 RTL10Q7L3V2 364 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 GRASPQ7Z6J2 395 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-225ENST00000556798 UBR7Q8N806 425 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 C12orf29Q8N999 325 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 STKLD1Q8NE28 680 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 ANKRD20A12PQ8NF67 263 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 TNIP3Q96KP6 325 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 NT5C1AQ9BXI3 368 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 B3GNT5Q9BYG0 378 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 ZNF518BQ9C0D4 1074 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 FAM49BQ9NUQ9 324 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 CEP72Q9P209 647 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 HSFX1Q9UBD0 423 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 FAM50BQ9Y247 325 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 MYO16Q9Y6X6 1858 aa18.62■□□□□ 0.57
SHMT2-225ENST00000556798 CLDN5O00501 218 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 TPM2P07951 284 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 BDNFP23560 247 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 ALDH1A3P47895 512 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 TUFMP49411 452 aaKnown RBP18.61■□□□□ 0.57
SHMT2-225ENST00000556798 PLD1Q13393 1074 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 CFAP221Q4G0U5 840 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 LRSAM1Q6UWE0 723 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 FAM200AQ8TCP9 573 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 GPR152Q8TDT2 470 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 GIPC2Q8TF65 315 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 FUBP3Q96I24 572 aaKnown RBP eCLIP18.61■□□□□ 0.57
SHMT2-225ENST00000556798 KREMEN1Q96MU8 473 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 NECTIN4Q96NY8 510 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 ABCB6Q9NP58 842 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 SIX2Q9NPC8 291 aa18.61■□□□□ 0.57
SHMT2-225ENST00000556798 UBE2TQ9NPD8 197 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-225ENST00000556798 DNMT3BQ9UBC3 853 aaKnown RBP18.61■□□□□ 0.57
SHMT2-225ENST00000556798 CLUHO75153 1309 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 POU2F2P09086 479 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 ACO1P21399 889 aaKnown RBP18.6■□□□□ 0.57
SHMT2-225ENST00000556798 CACNA2D1P54289 1103 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 RAD23BP54727 409 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 EPHB3P54753 998 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 YWHAEP62258 255 aaKnown RBP18.6■□□□□ 0.57
SHMT2-225ENST00000556798 GCNT1Q02742 428 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 KCNMA1Q12791 1236 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 DDR2Q16832 855 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 TJAP1Q5JTD0 557 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 CYP26C1Q6V0L0 522 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 APTXQ7Z2E3 356 aaKnown RBP18.6■□□□□ 0.57
SHMT2-225ENST00000556798 FAM35AQ86V20 835 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 SCN4BQ8IWT1 228 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 HS6ST3Q8IZP7 471 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 CRYBG2Q8N1P7 616 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 ELMOD1Q8N336 334 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 TTC39CQ8N584 583 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 SLC4A11Q8NBS3 891 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 CORO1BQ9BR76 489 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 MED10Q9BTT4 135 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 TSPY26PQ9H489 355 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 APEX2Q9UBZ4 518 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 AJAP1Q9UKB5 411 aaPredicted RBP18.6■□□□□ 0.57
SHMT2-225ENST00000556798 PCDHB4Q9Y5E5 795 aa18.6■□□□□ 0.57
SHMT2-225ENST00000556798 LGALS16A8MUM7 142 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 ADORA2BP29275 332 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 KLK7P49862 253 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 TMEM270Q6UE05 265 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 PAQR9Q6ZVX9 377 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 GET4Q7L5D6 327 aaPredicted RBP18.59■□□□□ 0.57
SHMT2-225ENST00000556798 FUKQ8N0W3 1084 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 SLC2A14Q8TDB8 520 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 ZNF512Q96ME7 567 aaPredicted RBP18.59■□□□□ 0.57
SHMT2-225ENST00000556798 NECAB3Q96P71 396 aaPredicted RBP18.59■□□□□ 0.57
SHMT2-225ENST00000556798 LSM14BQ9BX40 385 aaKnown RBP18.59■□□□□ 0.57
SHMT2-225ENST00000556798 WDR6Q9NNW5 1121 aaKnown RBP18.59■□□□□ 0.57
SHMT2-225ENST00000556798 KRT82Q9NSB4 513 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 TMEM30AQ9NV96 361 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 ANAPC1Q9H1A4 1944 aa18.59■□□□□ 0.57
SHMT2-225ENST00000556798 CAVIN2O95810 425 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 RHOP08100 348 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 PTPN2P17706 415 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 GRIK1P39086 918 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 MAGEA11P43364 429 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 VEPH1Q14D04 833 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 ARHGAP44Q17R89 818 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 PABPC1LQ4VXU2 614 aaKnown RBP18.58■□□□□ 0.56
SHMT2-225ENST00000556798 FKBP15Q5T1M5 1219 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 IQCEQ6IPM2 695 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 DPY19L2P1Q6NXN4 242 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 TMEM176AQ96HP8 235 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 RPGRIP1Q96KN7 1286 aa18.58■□□□□ 0.56
SHMT2-225ENST00000556798 HEXIM2Q96MH2 286 aaKnown RBP18.58■□□□□ 0.56
SHMT2-225ENST00000556798 PHF7Q9BWX1 381 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-225ENST00000556798 FAM124BQ9H5Z6 455 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-225ENST00000556798 ATP8B3O60423 1300 aa18.57■□□□□ 0.56
SHMT2-225ENST00000556798 VCANP13611 3396 aa18.57■□□□□ 0.56
SHMT2-225ENST00000556798 F8VP50 259 aa18.57■□□□□ 0.56
SHMT2-225ENST00000556798 NRG2O14511 850 aaPredicted RBP18.57■□□□□ 0.56
SHMT2-225ENST00000556798 CALCAP01258 141 aa18.57■□□□□ 0.56
SHMT2-225ENST00000556798 TRIM21P19474 475 aaKnown RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms