RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PHKA2P46019 1235 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 DRG2P55039 364 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 LRRC6Q86X45 466 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 ARMC2Q8NEN0 867 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 TCP10LQ8TDR4 215 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 ATXN2LQ8WWM7 1075 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 TTC1Q99614 292 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 CNTNAP1P78357 1384 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 MYPNQ86TC9 1320 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 A0A087WZ62 844 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 TRIM49D1C9J1S8 452 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 DNALI1O14645 258 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 OGTO15294 1046 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 HAUS5O94927 633 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 NPTXRO95502 500 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 KCNA2P16389 499 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 ELK3P41970 407 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 EPHB1P54762 984 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 NME3Q13232 169 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 EML3Q32P44 896 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 TAF1BQ53T94 588 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 KDELC2Q7Z4H8 507 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 GBP7Q8N8V2 638 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 C12orf29Q8N999 325 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 TFAP2BQ92481 460 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 FDXACB1Q9BRP7 624 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 HEY2Q9UBP5 337 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 PLSCR1O15162 318 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 ASAP2O43150 1006 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 VNN1O95497 513 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 PYGBP11216 843 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 BGNP21810 368 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 SDC4P31431 198 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 ALDH18A1P54886 795 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 ANKRD22Q5VYY1 191 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 TMEM192Q8IY95 271 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 DNAAF3Q8N9W5 541 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 FAM161BQ96MY7 647 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 SLITRK1Q96PX8 696 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 HES2Q9Y543 173 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 COL16A1Q07092 1604 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 ATXN3P54252 364 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 VCPP55072 806 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 CRADDP78560 199 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 PIGHQ14442 188 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 ZRSR2Q15696 482 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 ZCCHC23Q6ZST2 131 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 NLRP9Q7RTR0 991 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 CATSPER4Q7RTX7 472 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 DPP9Q86TI2 863 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 UNC45BQ8IWX7 931 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 SCUBE3Q8IX30 993 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 PPFIBP2Q8ND30 876 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 CCHCR1Q8TD31 782 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 DEPDC1BQ8WUY9 529 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 TTC25Q96NG3 672 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 TSSK1BQ9BXA7 367 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 C17orf75Q9HAS0 396 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 SCN7AQ01118 1682 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 LIASO43766 372 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 FAM155BO75949 473 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 FDX1P10109 184 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 NCF2P19878 526 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 GDF10P55107 478 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 SLC1A5Q15758 541 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 SH3PXD2AQ5TCZ1 1133 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 LGSNQ5TDP6 509 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 VSTM1Q6UX27 236 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 ZNF677Q86XU0 584 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 SAMD3Q8N6K7 520 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 TRPM4Q8TD43 1214 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 CKAP2Q8WWK9 683 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 ACAP3Q96P50 834 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 VPS11Q9H270 941 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 EPB41L4BQ9H329 900 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 ASNSD1Q9NWL6 643 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 ZC3H7BQ9UGR2 993 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 USH1CQ9Y6N9 552 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 PCNTO95613 3336 aa12.72□□□□□ -0.37
CCDC88C-211ENST00000556726 IQANK1A0A1B0GTG1 560 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 ADCY3O60266 1144 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 C4BPAP04003 597 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 ZNF286BP0CG31 522 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 MIPP30301 263 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 FOXN2P32314 431 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 ABCG1P45844 678 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 R3HDM1Q15032 1099 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 KIZQ2M2Z5 673 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 TREML2Q5T2D2 321 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 SYDE1Q6ZW31 735 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 CCDC125Q86Z20 511 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 ARID3BQ8IVW6 561 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 RXFP2Q8WXD0 754 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 SPDL1Q96EA4 605 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 HPDLQ96IR7 371 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 PORCNQ9H237 461 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 STRIP2Q9ULQ0 834 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 XIRP1Q702N8 1843 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms