RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 SRRM3A6NNA2 597 aaPredicted RBP15.56■□□□□ 0.08
CUX1-215ENST00000556210 CTSHP09668 335 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 GSCP56915 257 aaPredicted RBP15.56■□□□□ 0.08
CUX1-215ENST00000556210 COPS2P61201 443 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 BMPR2Q13873 1038 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 PIGHQ14442 188 aaPredicted RBP15.56■□□□□ 0.08
CUX1-215ENST00000556210 MROH9Q5TGP6 573 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 PNMA3Q9UL41 463 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 PIN4Q9Y237 131 aaKnown RBP15.56■□□□□ 0.08
CUX1-215ENST00000556210 MAPK13O15264 365 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 ONECUT3O60422 494 aaPredicted RBP15.56■□□□□ 0.08
CUX1-215ENST00000556210 ARL4AP40617 200 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 SURF1Q15526 300 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 PAN2Q504Q3 1202 aaKnown RBP15.56■□□□□ 0.08
CUX1-215ENST00000556210 PCGF5Q86SE9 256 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 GLIS1Q8NBF1 620 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 JOSD2Q8TAC2 188 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 FAM111AQ96PZ2 611 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 SIK2Q9H0K1 926 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 VCXQ9H320 206 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 DNAJC8O75937 253 aaPredicted RBP15.55■□□□□ 0.08
CUX1-215ENST00000556210 NFICP08651 508 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 NOMO3P69849 1222 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 NIPA1Q7RTP0 329 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 PDCD7Q8N8D1 485 aaKnown RBP15.55■□□□□ 0.08
CUX1-215ENST00000556210 LMO3Q8TAP4 145 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 AGAP11Q8TF27 550 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 DEPDC1BQ8WUY9 529 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 DNAI2Q9GZS0 605 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 GRHL1Q9NZI5 618 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 KAT6AQ92794 2004 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 CCND1P24385 295 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 AKAP5P24588 427 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 WNT7BP56706 349 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 CCNG2Q16589 344 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 FKBP1CQ5VVH2 108 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 NXNQ6DKJ4 435 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 ZDHHC24Q6UX98 284 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 CATSPERGQ6ZRH7 1159 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 C2orf40Q9H1Z8 148 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 SMARCAD1Q9H4L7 1026 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 ZFP69BQ9UJL9 534 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 ASAP2O43150 1006 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 STK10O94804 968 aaKnown RBP15.55■□□□□ 0.08
CUX1-215ENST00000556210 ABHD15Q6UXT9 468 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 CCT6BQ92526 530 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 ASCC2Q9H1I8 757 aaPredicted RBP15.55■□□□□ 0.08
CUX1-215ENST00000556210 VPS11Q9H270 941 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 BATF3Q9NR55 127 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 WHRNQ9P202 907 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 PCYOX1Q9UHG3 505 aa15.55■□□□□ 0.08
CUX1-215ENST00000556210 TXNDC9O14530 226 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 TBC1D12O60347 775 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 AVILO75366 819 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 GSTA1P08263 222 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 ITKQ08881 620 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 C1orf220Q5T0J3 134 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 POTEAQ6S8J7 498 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 TMEM192Q8IY95 271 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 RDM1Q8NG50 284 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 RXFP2Q8WXD0 754 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 NUDCD1Q96RS6 583 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 ZNF214Q9UL59 606 aaPredicted RBP15.54■□□□□ 0.08
CUX1-215ENST00000556210 PTPRJQ12913 1337 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 LACTBL1A8MY62 500 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 ESRRAP11474 423 aaPredicted RBP15.54■□□□□ 0.08
CUX1-215ENST00000556210 PEX5P50542 639 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 KDSRQ06136 332 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 ZNF677Q86XU0 584 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 SAMD3Q8N6K7 520 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 CHST13Q8NET6 341 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 EXD1Q8NHP7 514 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 MFSD14AQ96MC6 490 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 SERPINB12Q96P63 405 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 TMEM59LQ9UK28 342 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 COMMD10Q9Y6G5 202 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 MYH11P35749 1972 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 RPTORQ8N122 1335 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 XRCC4Q13426 336 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 TAF5Q15542 800 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 GOLGA7BQ2TAP0 167 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 IL31Q6EBC2 164 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 RAPH1Q70E73 1250 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 FAM131BQ86XD5 332 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 C7orf43Q8WVR3 580 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 SETD4Q9NVD3 440 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 ZC3H7BQ9UGR2 993 aaKnown RBP15.54■□□□□ 0.08
CUX1-215ENST00000556210 C15orf41Q9Y2V0 281 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 MROH7Q68CQ1 1323 aa15.54■□□□□ 0.08
CUX1-215ENST00000556210 ATP9BO43861 1147 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 MYL3P08590 195 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 CD48P09326 243 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 NCF2P19878 526 aaPredicted RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 RFC5P40937 340 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 SNRPFP62306 86 aaKnown RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 CCNA1P78396 465 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 CACNB2Q08289 660 aaPredicted RBP15.53■□□□□ 0.08
CUX1-215ENST00000556210 PTK7Q13308 1070 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 TFDP2Q14188 446 aa15.53■□□□□ 0.08
CUX1-215ENST00000556210 EFTUD2Q15029 972 aaKnown RBP eCLIP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms