RNA–Protein interactions for RNA: ENST00000555252.5

MTHFD1-210, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 1 (best)

Gene MTHFD1, Length 2,053 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-210ENST00000555252 TSHRP16473 764 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 RPA3P35244 121 aaPredicted RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 LIG4P49917 911 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 RPL26P61254 145 aaKnown RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 R3HDM1Q15032 1099 aaKnown RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 DALRD3Q5D0E6 543 aaKnown RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 EFHC2Q5JST6 749 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 SLFN12LQ6IEE8 588 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 LVRNQ6Q4G3 990 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 MTDHQ86UE4 582 aaKnown RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 KATNAL2Q8IYT4 538 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 NRG4Q8WWG1 115 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 SKA1Q96BD8 255 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 KIFC3Q9BVG8 833 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 ACAD9Q9H845 621 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 SEPT9Q9UHD8 586 aaPredicted RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 ANAPC7Q9UJX3 599 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 GRID1Q9ULK0 1009 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 SHOC2Q9UQ13 582 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 STYXL1Q9Y6J8 313 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 DOCK1Q14185 1865 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 MYPNQ86TC9 1320 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 FER1L6Q2WGJ9 1857 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 FOXO6A8MYZ6 492 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 ALOX15BO15296 676 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 ATMINO43313 823 aaPredicted RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 TBX10O75333 385 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 PIGRP01833 764 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 SUPT20HL2P0C7V6 817 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 UNGP13051 313 aaPredicted RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 PHBP35232 272 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 ACTR2P61160 394 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 CDK16Q00536 496 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 PRKCEQ02156 737 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 DGKZQ13574 1117 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 SLC1A5Q15758 541 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 PKN2Q16513 984 aaKnown RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 SUPT20HL1Q3ZLR7 823 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 C6orf163Q5TEZ5 329 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 FOXB2Q5VYV0 432 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 DSTYKQ6XUX3 929 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 ADGRG6Q86SQ4 1221 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 CHSY1Q86X52 802 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 RHOT1Q8IXI2 618 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 MCOLN2Q8IZK6 566 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 VPS52Q8N1B4 723 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 EXD1Q8NHP7 514 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 BTBD6Q96KE9 485 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 FNBP1Q96RU3 617 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 HAPLN3Q96S86 360 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 FAM213AQ9BRX8 229 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 TEX13BQ9BXU2 312 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 POLR3FQ9H1D9 316 aaPredicted RBP11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 SAYSD1Q9NPB0 183 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 XPNPEP1Q9NQW7 623 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 HACL1Q9UJ83 578 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 TMCO1Q9UM00 188 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 RIPK3Q9Y572 518 aa11.23□□□□□ -0.61
MTHFD1-210ENST00000555252 MAP3K13O43283 966 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 CREB3O43889 395 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 PIM1P11309 404 aaPredicted RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 PTPRAP18433 802 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 GEMIN4P57678 1058 aaKnown RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 CDK18Q07002 472 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 SEPT7Q16181 437 aaKnown RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 TRMT5Q32P41 509 aaKnown RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 TBC1D25Q3MII6 688 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 LIN9Q5TKA1 542 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 RFWD3Q6PCD5 774 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 CENPUQ71F23 418 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 NET1Q7Z628 596 aaPredicted RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 PCGF5Q86SE9 256 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 ATG4AQ8WYN0 398 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 LZICQ8WZA0 190 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 SPOCK2Q92563 424 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 OPTNQ96CV9 577 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 VCPIP1Q96JH7 1222 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 ASCC2Q9H1I8 757 aaPredicted RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 GPAMQ9HCL2 828 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 NPHS2Q9NP85 383 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 TOPORSQ9NS56 1045 aaPredicted RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 DNAJC17Q9NVM6 304 aaKnown RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 NDUFA13Q9P0J0 144 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 ZNF214Q9UL59 606 aaPredicted RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 DRG1Q9Y295 367 aaKnown RBP11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 SSX2IPQ9Y2D8 614 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 TBC1D30Q9Y2I9 924 aa11.22□□□□□ -0.61
MTHFD1-210ENST00000555252 EIF4E1BA6NMX2 242 aaKnown RBP11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 SMAPO00193 183 aa11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 KRT36O76013 467 aa11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 PROSCO94903 275 aa11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 RARBP10826 455 aa11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 CRABP2P29373 138 aa11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 GSTT1P30711 240 aa11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 ICAM3P32942 547 aa11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 NAMPTP43490 491 aa11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 ARFIP2P53365 341 aa11.21□□□□□ -0.61
MTHFD1-210ENST00000555252 TRIP13Q15645 432 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms