RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 HOXD9P28356 352 aaPredicted RBP3.08□□□□□ -1.92
SRP54-204ENST00000553923 GCLCP48506 637 aaPredicted RBP3.08□□□□□ -1.92
SRP54-204ENST00000553923 CLCN2P51788 898 aa3.08□□□□□ -1.92
SRP54-204ENST00000553923 ZNF135P52742 658 aaPredicted RBP3.08□□□□□ -1.92
SRP54-204ENST00000553923 DSC2Q02487 901 aa3.08□□□□□ -1.92
SRP54-204ENST00000553923 SRSF1Q07955 248 aaKnown RBP eCLIP3.08□□□□□ -1.92
SRP54-204ENST00000553923 RBMS2Q15434 407 aaKnown RBP3.08□□□□□ -1.92
SRP54-204ENST00000553923 PARS2Q7L3T8 475 aaKnown RBP3.08□□□□□ -1.92
SRP54-204ENST00000553923 GALNT4Q8N4A0 578 aa3.08□□□□□ -1.92
SRP54-204ENST00000553923 RP9Q8TA86 221 aaKnown RBP3.08□□□□□ -1.92
SRP54-204ENST00000553923 COG1Q8WTW3 980 aa3.08□□□□□ -1.92
SRP54-204ENST00000553923 KAT5Q92993 513 aa3.08□□□□□ -1.92
SRP54-204ENST00000553923 LYZL4Q96KX0 146 aa3.08□□□□□ -1.92
SRP54-204ENST00000553923 CAMK1GQ96NX5 476 aa3.08□□□□□ -1.92
SRP54-204ENST00000553923 VRK1Q99986 396 aaPredicted RBP3.08□□□□□ -1.92
SRP54-204ENST00000553923 SAP30BPQ9UHR5 308 aaKnown RBP3.08□□□□□ -1.92
SRP54-204ENST00000553923 SSX2IPQ9Y2D8 614 aa3.08□□□□□ -1.92
SRP54-204ENST00000553923 TTC3P53804 2025 aa3.08□□□□□ -1.92
SRP54-204ENST00000553923 CCDC154A6NI56 674 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 GTPBP1O00178 669 aaKnown RBP3.07□□□□□ -1.92
SRP54-204ENST00000553923 ABLIM3O94929 683 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 SOX5P35711 763 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 FXR1P51114 621 aaKnown RBP eCLIP3.07□□□□□ -1.92
SRP54-204ENST00000553923 KLF1Q13351 362 aaPredicted RBP3.07□□□□□ -1.92
SRP54-204ENST00000553923 KIF22Q14807 665 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 ICE2Q659A1 982 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 SDE2Q6IQ49 451 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 SLC4A10Q6U841 1118 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 KIRREL2Q6UWL6 708 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 ZNF813Q6ZN06 617 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 FAM90A1Q86YD7 464 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 ACRBPQ8NEB7 543 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.07□□□□□ -1.92
SRP54-204ENST00000553923 ZNF398Q8TD17 642 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 FAM118BQ9BPY3 351 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 SLKQ9H2G2 1235 aaPredicted RBP3.07□□□□□ -1.92
SRP54-204ENST00000553923 CFAP97Q9P2B7 532 aa3.07□□□□□ -1.92
SRP54-204ENST00000553923 hCG_2014768A0A024R1R8 64 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 TCRBV5S1A1TA0A578 114 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 TLDC2A0PJX2 215 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 ADAM10O14672 748 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 DCLK1O15075 740 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 ERC2O15083 957 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 SMAD6O43541 496 aaKnown RBP3.06□□□□□ -1.92
SRP54-204ENST00000553923 TOMM40O96008 361 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 FESP07332 822 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 CHRM5P08912 532 aaPredicted RBP3.06□□□□□ -1.92
SRP54-204ENST00000553923 NPSP0C0P6 89 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 RARBP10826 455 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 PRDX5P30044 214 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 HTR6P50406 440 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 CT47A1Q5JQC4 288 aaPredicted RBP3.06□□□□□ -1.92
SRP54-204ENST00000553923 WASHC2AQ641Q2 1341 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 SFRP4Q6FHJ7 346 aaPredicted RBP3.06□□□□□ -1.92
SRP54-204ENST00000553923 TMEM108Q6UXF1 575 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 Q6ZWC4 215 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 USP37Q86T82 979 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 SPATS2Q86XZ4 545 aaKnown RBP3.06□□□□□ -1.92
SRP54-204ENST00000553923 CBARPQ8N350 705 aaPredicted RBP3.06□□□□□ -1.92
SRP54-204ENST00000553923 COA7Q96BR5 231 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 DAZAP1Q96EP5 407 aaKnown RBP3.06□□□□□ -1.92
SRP54-204ENST00000553923 LENG8Q96PV6 779 aaPredicted RBP3.06□□□□□ -1.92
SRP54-204ENST00000553923 C1orf43Q9BWL3 253 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 GABRQQ9UN88 632 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 TBX22Q9Y458 520 aa3.06□□□□□ -1.92
SRP54-204ENST00000553923 PHLDB1Q86UU1 1377 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 SBNO2Q9Y2G9 1366 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 FAM90A8PA6NJQ4 464 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 PCDHGA12O60330 932 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 CLSTN1O94985 981 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 FAM90A13PP0C7W8 464 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 FAM90A24PP0C7X0 464 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 IBSPP21815 317 aaPredicted RBP3.05□□□□□ -1.92
SRP54-204ENST00000553923 SLC16A1P53985 500 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 ANAPC15P60006 121 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 IGBP1P78318 339 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 UBAP2Q5T6F2 1119 aaKnown RBP3.05□□□□□ -1.92
SRP54-204ENST00000553923 PPP4R3AQ6IN85 833 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 Q6ZTC4 211 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 USP43Q70EL4 1123 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 CERS3Q8IU89 383 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 TERB1Q8NA31 727 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 WDR66Q8TBY9 1149 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 CHAC2Q8WUX2 184 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 ATG4AQ8WYN0 398 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 SNX18Q96RF0 628 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 CTAGE1Q96RT6 745 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 SIK2Q9H0K1 926 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 ZNF112Q9UJU3 913 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 SERTAD3Q9UJW9 196 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 PCDHGA9Q9Y5G4 932 aaKnown RBP3.05□□□□□ -1.92
SRP54-204ENST00000553923 PCDHGA8Q9Y5G5 932 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 PCDHGA7Q9Y5G6 932 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 PCDHGA6Q9Y5G7 932 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 PCDHGA3Q9Y5H0 932 aa3.05□□□□□ -1.92
SRP54-204ENST00000553923 TCF20Q9UGU0 1960 aaKnown RBP3.05□□□□□ -1.92
SRP54-204ENST00000553923 A1L4Q6 167 aa3.04□□□□□ -1.92
SRP54-204ENST00000553923 PDE8BO95263 885 aa3.04□□□□□ -1.92
SRP54-204ENST00000553923 A1BGP04217 495 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms