RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-223ENST00000553686 GBP4Q96PP9 640 aa6.93□□□□□ -1.3
ATXN3-223ENST00000553686 RBM15Q96T37 977 aaKnown RBP eCLIP6.93□□□□□ -1.3
ATXN3-223ENST00000553686 RTP3Q9BQQ7 232 aa6.93□□□□□ -1.3
ATXN3-223ENST00000553686 RTKNQ9BST9 563 aa6.93□□□□□ -1.3
ATXN3-223ENST00000553686 KRTAP4-7Q9BYR0 210 aa6.93□□□□□ -1.3
ATXN3-223ENST00000553686 VTA1Q9NP79 307 aa6.93□□□□□ -1.3
ATXN3-223ENST00000553686 PDGFCQ9NRA1 345 aa6.93□□□□□ -1.3
ATXN3-223ENST00000553686 SWAP70Q9UH65 585 aa6.93□□□□□ -1.3
ATXN3-223ENST00000553686 FLNBO75369 2602 aaKnown RBP6.93□□□□□ -1.3
ATXN3-223ENST00000553686 FSD2A1L4K1 749 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 K7ESM1 405 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 GRM6O15303 877 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 FOXP2O15409 715 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 HIP1RO75146 1068 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 CKBP12277 381 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 FLT3P36888 993 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 OAZ1P54368 228 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 IRF9Q00978 393 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 CNTN2Q02246 1040 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 TFCP2Q12800 502 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 ZNF460Q14592 562 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 TCEA2Q15560 299 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 WDR72Q3MJ13 1102 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 FAM83BQ5T0W9 1011 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 TAPT1Q6NXT6 567 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 ARHGEF18Q6ZSZ5 1173 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 UBE2R2Q712K3 238 aaPredicted RBP6.92□□□□□ -1.3
ATXN3-223ENST00000553686 LIMS2Q7Z4I7 341 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 ADGRA1Q86SQ6 560 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 CCDC105Q8IYK2 499 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 SYNPOQ8N3V7 929 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 FAM133AQ8N9E0 248 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 WDR48Q8TAF3 677 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 ASB15Q8WXK1 588 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 IL17RAQ96F46 866 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 BORCS6Q96GS4 357 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 WDR11Q9BZH6 1224 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 JADE2Q9NQC1 790 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 NR2E1Q9Y466 385 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 EMSYQ7Z589 1322 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 A0A1B0GUL6 1792 aa6.92□□□□□ -1.3
ATXN3-223ENST00000553686 CEP250Q9BV73 2442 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 WDR87Q6ZQQ6 2873 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 LAMTOR5O43504 91 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 MPIG6BO95866 241 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 MMP1P03956 469 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 UBTFL1P0CB47 393 aaPredicted RBP6.91□□□□□ -1.3
ATXN3-223ENST00000553686 EEF2P13639 858 aaKnown RBP6.91□□□□□ -1.3
ATXN3-223ENST00000553686 AOC1P19801 751 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 MECP2P51608 486 aaKnown RBP6.91□□□□□ -1.3
ATXN3-223ENST00000553686 CCDC158Q5M9N0 1113 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 GLB1LQ6UWU2 654 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 HIPK4Q8NE63 616 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 DBF4BQ8NFT6 615 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 OR6J1Q8NGC5 347 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 SUSD6Q92537 303 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 APPBP2Q92624 585 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 SECISBP2LQ93073 1101 aaKnown RBP6.91□□□□□ -1.3
ATXN3-223ENST00000553686 BOCQ9BWV1 1114 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 BTBD2Q9BX70 525 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 AMNQ9BXJ7 453 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 ACAD9Q9H845 621 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 RAVER2Q9HCJ3 691 aaKnown RBP6.91□□□□□ -1.3
ATXN3-223ENST00000553686 FANCLQ9NW38 375 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 MCM9Q9NXL9 1143 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 CNOT11Q9UKZ1 510 aaKnown RBP6.91□□□□□ -1.3
ATXN3-223ENST00000553686 PA2G4Q9UQ80 394 aaKnown RBP6.91□□□□□ -1.3
ATXN3-223ENST00000553686 SPTBN2O15020 2390 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 FANCIQ9NVI1 1328 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 SMCHD1A6NHR9 2005 aa6.91□□□□□ -1.3
ATXN3-223ENST00000553686 NPEPPSL1A6NEC2 478 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 GOLGA6L22H0YM25 854 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 JMJD7P0C870 316 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 SRGAP2BP0DMP2 458 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 SDHAP31040 664 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 CSF2RBP32927 897 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 NRIP1P48552 1158 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 IL13RA1P78552 427 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 TKFCQ3LXA3 575 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 TTC39AQ5SRH9 613 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 PIK3R6Q5UE93 754 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 CDCA2Q69YH5 1023 aaPredicted RBP6.9□□□□□ -1.3
ATXN3-223ENST00000553686 LRSAM1Q6UWE0 723 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 C16orf86Q6ZW13 317 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 CXXC5Q7LFL8 322 aaKnown RBP6.9□□□□□ -1.3
ATXN3-223ENST00000553686 GPR155Q7Z3F1 870 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 SESTD1Q86VW0 696 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 FBXO16Q8IX29 292 aaPredicted RBP6.9□□□□□ -1.3
ATXN3-223ENST00000553686 DCLK2Q8N568 766 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 MIGA1Q8NAN2 632 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 SEPT8Q92599 483 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 ERCC4Q92889 916 aaPredicted RBP6.9□□□□□ -1.3
ATXN3-223ENST00000553686 NEK1Q96PY6 1258 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 IFIH1Q9BYX4 1025 aaKnown RBP6.9□□□□□ -1.3
ATXN3-223ENST00000553686 SLC38A10Q9HBR0 1119 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 PPP4R1LQ9P1A2 415 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 MAGEC2Q9UBF1 373 aaPredicted RBP6.9□□□□□ -1.3
ATXN3-223ENST00000553686 ASB1Q9Y576 335 aa6.9□□□□□ -1.3
ATXN3-223ENST00000553686 USP24Q9UPU5 2620 aa6.89□□□□□ -1.31
ATXN3-223ENST00000553686 LOC102724159A0A0B4J2E5 919 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms