RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 RNF169Q8NCN4 708 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 CHST13Q8NET6 341 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 EIF2AK1Q9BQI3 630 aaKnown RBP5.9□□□□□ -1.46
SCFD1-209ENST00000553280 KATNAL1Q9BW62 490 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 PCDHAC1Q9H158 963 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 FAM83DQ9H4H8 585 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 SPON1Q9HCB6 807 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 MRPS18AQ9NVS2 196 aaKnown RBP5.9□□□□□ -1.46
SCFD1-209ENST00000553280 PPP4R1LQ9P1A2 415 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 POGKQ9P215 609 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 ST6GALNAC2Q9UJ37 374 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 SCAF8Q9UPN6 1271 aaKnown RBP5.9□□□□□ -1.46
SCFD1-209ENST00000553280 ATP11BQ9Y2G3 1177 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 TBC1D30Q9Y2I9 924 aa5.9□□□□□ -1.46
SCFD1-209ENST00000553280 RRN3P2A6NIE6 340 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 TNFRSF6BO95407 300 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 ITGB1P05556 798 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 TPH1P17752 444 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 GNAT2P19087 354 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 RPS19P39019 145 aaKnown RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 TOB1P50616 345 aaPredicted RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 PPP2CBP62714 309 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 PPP2CAP67775 309 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 SLFN5Q08AF3 891 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 CNGB1Q14028 1251 aaPredicted RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 BOP1Q14137 746 aaKnown RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 GRM7Q14831 915 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 TRIM71Q2Q1W2 868 aaKnown RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 NOMO2Q5JPE7 1267 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 FBXO47Q5MNV8 452 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 TMTC4Q5T4D3 741 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 INTS11Q5TA45 600 aaKnown RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 RAP1GAP2Q684P5 730 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 SPTY2D1Q68D10 685 aaPredicted RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 LIN54Q6MZP7 749 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 PLEKHH3Q7Z736 793 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 PCGF5Q86SE9 256 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 MOGAT3Q86VF5 341 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 NAXEQ8NCW5 288 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 PPHLN1Q8NEY8 458 aaKnown RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 OR52N2Q8NGI0 321 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 SPPL3Q8TCT6 385 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 SMCR8Q8TEV9 937 aaPredicted RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 ST8SIA2Q92186 375 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 LMF1Q96S06 567 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 PRPF18Q99633 342 aaKnown RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 SSBP3Q9BWW4 388 aaPredicted RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 ZBTB26Q9HCK0 441 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 ETAA1Q9NY74 926 aa5.89□□□□□ -1.47
SCFD1-209ENST00000553280 MAP3K20Q9NYL2 800 aaKnown RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 HERC5Q9UII4 1024 aaKnown RBP5.89□□□□□ -1.47
SCFD1-209ENST00000553280 AQP7P3A6NL99 342 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 H7C4K7 107 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 POLRMTO00411 1230 aaKnown RBP5.88□□□□□ -1.47
SCFD1-209ENST00000553280 EPB41L2O43491 1005 aaKnown RBP5.88□□□□□ -1.47
SCFD1-209ENST00000553280 MFAP3LO75121 409 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 VPS4BO75351 444 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 ITGA2BP08514 1039 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 NPPBP16860 134 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 GCSHP23434 173 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 PTDSS1P48651 473 aaKnown RBP5.88□□□□□ -1.47
SCFD1-209ENST00000553280 PIGFQ07326 219 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 DDX10Q13206 875 aaKnown RBP5.88□□□□□ -1.47
SCFD1-209ENST00000553280 SURF1Q15526 300 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 TAF12Q16514 161 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 SLC5A9Q2M3M2 681 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 WDR78Q5VTH9 848 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 SULT6B1Q6IMI4 303 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 MRNIPQ6NTE8 343 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 ARHGEF18Q6ZSZ5 1173 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 GATAD2AQ86YP4 633 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 CCDC28AQ8IWP9 274 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 SKA1Q96BD8 255 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 SLC46A1Q96NT5 459 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 MPHOSPH9Q99550 1183 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 SMOQ99835 787 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 PLA2G12BQ9BX93 195 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 TLR10Q9BXR5 811 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 KIF17Q9P2E2 1029 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 SRP68Q9UHB9 627 aaKnown RBP5.88□□□□□ -1.47
SCFD1-209ENST00000553280 CA14Q9ULX7 337 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 DTNAQ9Y4J8 743 aa5.88□□□□□ -1.47
SCFD1-209ENST00000553280 NPEPPSL1A6NEC2 478 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 J3KRW8 73 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 EYA2O00167 538 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 DCLK1O15075 740 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 ASNA1O43681 348 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 COQ9O75208 318 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 FAM155BO75949 473 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 IPO13O94829 963 aaKnown RBP5.87□□□□□ -1.47
SCFD1-209ENST00000553280 GLP2RO95838 553 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 ATXN1LP0C7T5 689 aaKnown RBP5.87□□□□□ -1.47
SCFD1-209ENST00000553280 FCER1AP12319 257 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 ATICP31939 592 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 CHN2P52757 468 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 TIGD6Q17RP2 521 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 ZNF750Q32MQ0 723 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 MGAT5BQ3V5L5 792 aa5.87□□□□□ -1.47
SCFD1-209ENST00000553280 ELOA2Q8IYF1 753 aaPredicted RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms