RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 RBP3P10745 1247 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 MMP8P22894 467 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 LMO2P25791 158 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 ICAM3P32942 547 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 MAGEA4P43358 317 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 CENPCQ03188 943 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 ACTN3Q08043 901 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 SH3D19Q5HYK7 790 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 C15orf39Q6ZRI6 1047 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 WDR49Q8IV35 697 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 UNC45BQ8IWX7 931 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 PALM2Q8IXS6 379 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 CACNA2D3Q8IZS8 1091 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 KIF2BQ8N4N8 673 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 NPLOC4Q8TAT6 608 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 ZFP42Q96MM3 310 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 IFT122Q9HBG6 1241 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 AAASQ9NRG9 546 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 STK38LQ9Y2H1 464 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 TMEM191CA6NGB0 347 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 EIF4E1BA6NMX2 242 aaKnown RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 ATP2A1O14983 1001 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 TREHO43280 583 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 ADCY6O43306 1168 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 PPFIA2O75334 1257 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 TGFB3P10600 412 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 MNAT1P51948 309 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 RAD23BP54727 409 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 EIF3EP60228 445 aaKnown RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 CCNA1P78396 465 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 ARHGAP1Q07960 439 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 NME3Q13232 169 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 EML3Q32P44 896 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 TTC31Q49AM3 519 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 PPP1R26Q5T8A7 1209 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 CASC4Q6P4E1 433 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 EXOC3L1Q86VI1 746 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 FAM131BQ86XD5 332 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 STKLD1Q8NE28 680 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 SPATA18Q8TC71 538 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 SEC16BQ96JE7 1060 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 ZMAT2Q96NC0 199 aaKnown RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 MED10Q9BTT4 135 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 DDX20Q9UHI6 824 aaKnown RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 NUDT5Q9UKK9 219 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 NAALADL1Q9UQQ1 740 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 DIS3Q9Y2L1 958 aaKnown RBP5.88□□□□□ -1.47
LIMA1-215ENST00000552823 SCINQ9Y6U3 715 aa5.88□□□□□ -1.47
LIMA1-215ENST00000552823 A0A1W2PPM1 405 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ASB14A6NK59 587 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CREB3O43889 395 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PRPSAP2O60256 369 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TJP3O95049 919 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 C22orf31O95567 290 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 SNAI1O95863 264 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PGK1P00558 417 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CALB1P05937 261 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ASPAP45381 313 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 AFF1P51825 1210 aaKnown RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 SNRPFP62306 86 aaKnown RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CRADDP78560 199 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TNFAIP2Q03169 654 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 OVGP1Q12889 678 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 MPP2Q14168 576 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 E2F5Q15329 346 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PKN2Q16513 984 aaKnown RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CA9Q16790 459 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 HADHQ16836 314 aaKnown RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CCDC62Q6P9F0 684 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ZPBP2Q6X784 338 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 KDELC2Q7Z4H8 507 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 GPR142Q7Z601 462 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TBC1D1Q86TI0 1168 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PACS2Q86VP3 889 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CEP57Q86XR8 500 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 SLC4A11Q8NBS3 891 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TMEM176AQ96HP8 235 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 SLITRK1Q96PX8 696 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 XYLT2Q9H1B5 865 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PDZD7Q9H5P4 517 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TMEM134Q9H6X4 195 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 IL1RAPL1Q9NZN1 696 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 MFHAS1Q9Y4C4 1052 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 COL2A1P02458 1487 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 MAPK13O15264 365 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 KCNN4O15554 427 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 LRCH4O75427 683 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 RARGP13631 454 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 HSPA6P17066 643 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CA4P22748 312 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TNFRSF8P28908 595 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CTCFP49711 727 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 CACNB2Q08289 660 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 DNAJC3Q13217 504 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 PPIL2Q13356 520 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 ACVR2BQ13705 512 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 SLMAPQ14BN4 828 aa5.87□□□□□ -1.47
LIMA1-215ENST00000552823 TAF1CQ15572 869 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-215ENST00000552823 NOL9Q5SY16 702 aaKnown RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms