RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 STXBP5Q5T5C0 1151 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 SPEM1Q8N4L4 309 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 OR5B17Q8NGF7 314 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 TMEM174Q8WUU8 243 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 HPS3Q969F9 1004 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 RSPRY1Q96DX4 576 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 MMS19Q96T76 1030 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 PKMYT1Q99640 499 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 CGRRF1Q99675 332 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 SNX25Q9H3E2 840 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 TDP1Q9NUW8 608 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 TMLHEQ9NVH6 421 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 MAGED2Q9UNF1 606 aaPredicted RBP11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 CACNA1IQ9P0X4 2223 aa11.65□□□□□ -0.54
VTI1BP3-201ENST00000550220 SLC38A8A6NNN8 435 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 SPECC1L-ADORA2AF8WAN1 911 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 EXOC3O60645 756 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 LILRB5O75023 590 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 ACAT1P24752 427 aaKnown RBP11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 CYP2F1P24903 491 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 ANXA13P27216 316 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 CTHP32929 405 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 AFMP43652 599 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 CYP2J2P51589 502 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 TNNC1P63316 161 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 DNM1Q05193 864 aaKnown RBP11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 CYP24A1Q07973 514 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 PDGFRLQ15198 375 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 DDR2Q16832 855 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 FOXD4L6Q3SYB3 417 aaPredicted RBP11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 FOXD4L3Q6VB84 417 aaPredicted RBP11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 TMEM150AQ86TG1 271 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 NELFCDQ8IXH7 590 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 MAB21L3Q8N8X9 362 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 SUMF1Q8NBK3 374 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 RDH13Q8NBN7 331 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 GLIS3Q8NEA6 775 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 CCDC47Q96A33 483 aaKnown RBP11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 SYAP1Q96A49 352 aaPredicted RBP11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 CCDC127Q96BQ5 260 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 CCDC34Q96HJ3 373 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 SPATA17Q96L03 361 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 HINFPQ9BQA5 517 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 FAM83CQ9BQN1 747 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 SYT15Q9BQS2 421 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 BLZF1Q9H2G9 400 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 SLC39A2Q9NP94 309 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 MYH15Q9Y2K3 1946 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 USP34Q70CQ2 3546 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 GVINP1Q7Z2Y8 2422 aa11.64□□□□□ -0.55
VTI1BP3-201ENST00000550220 TRAV19A0A0A6YYK7 116 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 TRIM66O15016 1216 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 CLIC2O15247 247 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 PHACTR2O75167 634 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 PAPSS2O95340 614 aaPredicted RBP11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 PRAMEF12O95522 483 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 USP17L7P0C7H9 530 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 CNR2P34972 360 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 GRIK1P39086 918 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 KRT85P78386 507 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 FAM160A1Q05DH4 1040 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 CUL4BQ13620 913 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 WDR72Q3MJ13 1102 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 LMBRD2Q68DH5 695 aaPredicted RBP11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 TXNDC8Q6A555 127 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 OSTM1Q86WC4 334 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 SLC9A9Q8IVB4 645 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 SCN4BQ8IWT1 228 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 KIAA1958Q8N8K9 716 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 CCDC26Q8TAB7 109 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 MYCBPAPQ8TBZ2 947 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 USP13Q92995 863 aaPredicted RBP11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 SPATA32Q96LK8 384 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 LRRC3BQ96PB8 259 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 EPC1Q9H2F5 836 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 GKN1Q9NS71 199 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 EXOC1Q9NV70 894 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 GTSE1Q9NYZ3 720 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 RAB23Q9ULC3 237 aa11.63□□□□□ -0.55
VTI1BP3-201ENST00000550220 SCN1AP35498 2009 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 MYO15AQ9UKN7 3530 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 PDXKO00764 312 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 ATG13O75143 517 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 CST3P01034 146 aaPredicted RBP11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 RPN1P04843 607 aaKnown RBP11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 PDGFRBP09619 1106 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 P4HA1P13674 534 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 TRIM21P19474 475 aaKnown RBP11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 SDHBP21912 280 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 LMO2P25791 158 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 HOXA6P31267 233 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 ID4P47928 161 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 CLDN10P78369 228 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 GRSF1Q12849 480 aaKnown RBP eCLIP11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 NR1H3Q13133 447 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 RUNX3Q13761 415 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 DENND5BQ6ZUT9 1274 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 ERMP1Q7Z2K6 904 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 GPIHBP1Q8IV16 184 aa11.62□□□□□ -0.55
VTI1BP3-201ENST00000550220 OR6B3Q8NGW1 331 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms