RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SMARCB1Q12824 385 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 PPP1R26Q5T8A7 1209 aaPredicted RBP22.52■■□□□ 1.19
VPS29-206ENST00000549578 C4orf50Q6ZRC1 276 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 FUKQ8N0W3 1084 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 CYFIP2Q96F07 1278 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 ZSWIM1Q9BR11 485 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 MED10Q9BTT4 135 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 EDEM3Q9BZQ6 932 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 ZNF518BQ9C0D4 1074 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 CYP4F11Q9HBI6 524 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 MAN1C1Q9NR34 630 aa22.52■■□□□ 1.19
VPS29-206ENST00000549578 LRRC53A6NM62 1247 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 BDNFP23560 247 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 CYP2F1P24903 491 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 ADORA2BP29275 332 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 ELF1P32519 619 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 KCNC3Q14003 757 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 CCDC85BQ15834 202 aaPredicted RBP22.51■■□□□ 1.19
VPS29-206ENST00000549578 SGO2Q562F6 1265 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 PAQR9Q6ZVX9 377 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 FAM35AQ86V20 835 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 SLC47A2Q86VL8 602 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 EFHBQ8N7U6 833 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 SPPL2BQ8TCT7 592 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 C2orf15Q8WU43 125 aaKnown RBP22.51■■□□□ 1.19
VPS29-206ENST00000549578 CAPN11Q9UMQ6 739 aa22.51■■□□□ 1.19
VPS29-206ENST00000549578 PTPRDP23468 1912 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 A0A1W2PQJ5 194 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 PRRG1O14668 218 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 SOAT2O75908 522 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 GLP2RO95838 553 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 VDRP11473 427 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 GNA15P30679 374 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 CASP14P31944 242 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 ARID5AQ03989 594 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 GSE1Q14687 1217 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 CFAP221Q4G0U5 840 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 SLC7A14Q8TBB6 771 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 IQCDQ96DY2 449 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 FUBP3Q96I24 572 aaKnown RBP eCLIP22.5■■□□□ 1.19
VPS29-206ENST00000549578 SEPT5Q99719 369 aaPredicted RBP22.5■■□□□ 1.19
VPS29-206ENST00000549578 KIAA1257Q9ULG3 409 aa22.5■■□□□ 1.19
VPS29-206ENST00000549578 C1RP00736 705 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 SSTR3P32745 418 aaPredicted RBP22.49■■□□□ 1.19
VPS29-206ENST00000549578 CACNA2D1P54289 1103 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 PTK2Q05397 1052 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 TRIM14Q14142 442 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 MGAT5BQ3V5L5 792 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 LIN9Q5TKA1 542 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 ARHGAP17Q68EM7 881 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 TCEAL8Q8IYN2 117 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 HNRNPABQ99729 332 aaKnown RBP22.49■■□□□ 1.19
VPS29-206ENST00000549578 ABCB6Q9NP58 842 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 TMEM30AQ9NV96 361 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 MYO6Q9UM54 1294 aa22.49■■□□□ 1.19
VPS29-206ENST00000549578 MTCL1Q9Y4B5 1905 aaKnown RBP22.49■■□□□ 1.19
VPS29-206ENST00000549578 O00370 1275 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 THAP12O43422 761 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 C8AP07357 584 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 HAPLN1P10915 354 aaPredicted RBP22.48■■□□□ 1.19
VPS29-206ENST00000549578 GOLGA7BQ2TAP0 167 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 E4F1Q66K89 784 aaPredicted RBP22.48■■□□□ 1.19
VPS29-206ENST00000549578 SMYD5Q6GMV2 418 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 PPM1EQ8WY54 764 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 PLEKHA4Q9H4M7 779 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 KRT82Q9NSB4 513 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 TSPAN16Q9UKR8 245 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 MAFFQ9ULX9 164 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 LUC7L2Q9Y383 392 aaKnown RBP22.48■■□□□ 1.19
VPS29-206ENST00000549578 INSL5Q9Y5Q6 135 aa22.48■■□□□ 1.19
VPS29-206ENST00000549578 CYP11B1P15538 503 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 GPR15P49685 360 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 BPIFB4P59827 614 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 ZBED6P86452 979 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 GOLGA8FQ08AF8 430 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 GOLGA8DPQ0D2H9 430 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 TBX2Q13207 712 aaPredicted RBP22.47■■□□□ 1.19
VPS29-206ENST00000549578 ADAM15Q13444 863 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 SCN4BQ8IWT1 228 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 ZNF397Q8NF99 534 aaPredicted RBP22.47■■□□□ 1.19
VPS29-206ENST00000549578 ZNF606Q8WXB4 792 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 CASP10Q92851 521 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 CLDND1Q9NY35 253 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 YIPF1Q9Y548 306 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 ATP8B3O60423 1300 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 SPDYE4A6NLX3 237 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 RFPL2O75678 378 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 AP1G2O75843 785 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 KRT9P35527 623 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 SFMBT2Q5VUG0 894 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 EP400NLQ6ZTU2 488 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 CCDC149Q6ZUS6 474 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 NOP9Q86U38 636 aaKnown RBP22.47■■□□□ 1.19
VPS29-206ENST00000549578 EPS8L1Q8TE68 723 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 SMARCD1Q96GM5 515 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 HSFX1Q9UBD0 423 aa22.47■■□□□ 1.19
VPS29-206ENST00000549578 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.47■■□□□ 1.19
VPS29-206ENST00000549578 MICAL2O94851 1124 aa22.46■■□□□ 1.19
VPS29-206ENST00000549578 CFHP08603 1231 aa22.46■■□□□ 1.19
VPS29-206ENST00000549578 FAM200BP0CF97 657 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms