RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 RAP1GAPP47736 663 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 LHX1P48742 406 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 LIMK1P53667 647 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 WNT7BP56706 349 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 FAM160A1Q05DH4 1040 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 KCNA1Q09470 495 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CUL4AQ13619 759 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 TXNDC8Q6A555 127 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CCDC73Q6ZRK6 1079 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CACNA2D4Q7Z3S7 1137 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CAMKK1Q8N5S9 505 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 TOP6BLQ8N6T0 577 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CXorf38Q8TB03 319 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CHFRQ96EP1 664 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CEP295NLQ96MC4 621 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CNTNAP3BQ96NU0 1288 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CNTNAP3Q9BZ76 1288 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 EBF3Q9H4W6 596 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 DDX43Q9NXZ2 648 aaKnown RBP13.81□□□□□ -0.2
PTCH1-218ENST00000548945 SLC8A2Q9UPR5 921 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 CLIC4Q9Y696 253 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 VPS37CA5D8V6 355 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-218ENST00000548945 OTOL1A6NHN0 477 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-218ENST00000548945 GABRDO14764 452 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 RPP40O75818 363 aaKnown RBP13.8□□□□□ -0.2
PTCH1-218ENST00000548945 EPN2O95208 641 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 ZNF806P0C7X5 589 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 CYP2F1P24903 491 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 MAGEA11P43364 429 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 CDR1P51861 262 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 RBP5P82980 135 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 PPM1JQ5JR12 505 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 TRIM68Q6AZZ1 485 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 PKN3Q6P5Z2 889 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 DPH6Q7L8W6 267 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 SYCP3Q8IZU3 236 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 CPA6Q8N4T0 437 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 CSGALNACT2Q8N6G5 542 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 SAAL1Q96ER3 474 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 ZC3H10Q96K80 434 aaKnown RBP13.8□□□□□ -0.2
PTCH1-218ENST00000548945 MAGED2Q9UNF1 606 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-218ENST00000548945 PCDHGA5Q9Y5G8 931 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 NUP205Q92621 2012 aa13.8□□□□□ -0.2
PTCH1-218ENST00000548945 RNF40O75150 1001 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 TADA3O75528 432 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 USP17L7P0C7H9 530 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 TCF3P15923 654 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 PFKLP17858 780 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 GPR15P49685 360 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 CASP5P51878 434 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 MYO1EQ12965 1108 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 USP4Q13107 963 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 MTF1Q14872 753 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 ZNF77Q15935 545 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 DDR2Q16832 855 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 LIMS2Q7Z4I7 341 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 ADGRF2Q8IZF7 708 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 FSIP1Q8NA03 581 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 ZSWIM2Q8NEG5 633 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 CCDC26Q8TAB7 109 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 RIN3Q8TB24 985 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 OSCP1Q8WVF1 389 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 ATP2A3Q93084 1043 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 P2RY13Q9BPV8 354 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 ECT2Q9H8V3 914 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 TBC1D7Q9P0N9 293 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 SIX4Q9UIU6 781 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 GTF3C4Q9UKN8 822 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 SNX9Q9Y5X1 595 aa13.79□□□□□ -0.2
PTCH1-218ENST00000548945 ABCA7Q8IZY2 2146 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 TRAV19A0A0A6YYK7 116 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 GDF9O60383 454 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 EGFP01133 1207 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 CKMP06732 381 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 TMEM191BP0C7N4 346 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 CCDC192P0DO97 292 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 IDEP14735 1019 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 ARSAP15289 507 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 GJA4P35212 333 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 STAT6P42226 847 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 PDE6CP51160 858 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 GALK1P51570 392 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 SURF1Q15526 300 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 MAPRE1Q15691 268 aaKnown RBP13.78□□□□□ -0.2
PTCH1-218ENST00000548945 SOWAHAQ2M3V2 549 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 PLA2G2CQ5R387 149 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 SDHAF4Q5VUM1 108 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 FAM171BQ6P995 826 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 C4orf50Q6ZRC1 276 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 STXBP4Q6ZWJ1 553 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 SYT13Q7L8C5 426 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 SPATA2LQ8IUW3 424 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-218ENST00000548945 GPD1LQ8N335 351 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 KIAA1958Q8N8K9 716 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 ACDQ96AP0 544 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 ANKRD36BP1Q96IX9 119 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 SPATA17Q96L03 361 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 CLIC6Q96NY7 704 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 CBWD1Q9BRT8 395 aa13.78□□□□□ -0.2
PTCH1-218ENST00000548945 BACH2Q9BYV9 841 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms