RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ZNF844Q08AG5 666 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 IFRD2Q12894 506 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SEPT2Q15019 361 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 GEN1Q17RS7 908 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SH2D4BQ5SQS7 431 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 OLFML2BQ68BL8 750 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 PARD3BQ8TEW8 1205 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TSNARE1Q96NA8 513 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 CLEC4MQ9H2X3 399 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TTLL3Q9Y4R7 772 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 EME2A4GXA9 379 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PI4K2BG5E9Z4 385 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 SHOX2O60902 331 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 SETSIPP0DME0 302 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 CCND1P24385 295 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 TPD52P55327 224 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PTSQ03393 145 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 TROAPQ12815 778 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 NAB2Q15742 525 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 EPC2Q52LR7 807 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 FAM102BQ5T8I3 360 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 ELOA2Q8IYF1 753 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 UBR7Q8N806 425 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 C18orf8Q96DM3 657 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 LZTS2Q9BRK4 669 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 SLC13A1Q9BZW2 595 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 DCP1AQ9NPI6 582 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 LARSQ9P2J5 1176 aaKnown RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 CNTNAP5Q8WYK1 1306 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 GRID2IPA4D2P6 1211 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 DCDC2CA8MYV0 355 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 F5H423 210 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 LAD1O00515 517 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PODXLO00592 558 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 CASQ2O14958 399 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 FSBPO95073 299 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 NR3C1P04150 777 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 SHBGP04278 402 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 EIF2AK2P19525 551 aaKnown RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 HSPA9P38646 679 aaKnown RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 ALDH5A1P51649 535 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 RWDD2BP57060 319 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PRR20EP86478 221 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PRR20CP86479 221 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PRR20DP86480 221 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PRR20BP86481 221 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PRR20AP86496 221 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 KCNMA1Q12791 1236 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 RABGAP1LQ5R372 815 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 RNF207Q6ZRF8 634 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 AGR3Q8TD06 166 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 SLC26A7Q8TE54 656 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 NAF1Q96HR8 494 aaKnown RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 BTBD6Q96KE9 485 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 ERP44Q9BS26 406 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 IER2Q9BTL4 223 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 IDI2Q9BXS1 227 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 NUF2Q9BZD4 464 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 SEMA6BQ9H3T3 888 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 MAGEF1Q9HAY2 307 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 RAB20Q9NX57 234 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PCDHA6Q9UN73 950 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PCDHA8Q9Y5H6 950 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 COMMD10Q9Y6G5 202 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 LTBP2Q14767 1821 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 FLT1P17948 1338 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 KDM3AQ9Y4C1 1321 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 A0A1W2PQH9 124 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 UPK3BL1B0FP48 263 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 UPK3BL2E5RIL1 263 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 DNM1LO00429 736 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 SUPT3HO75486 399 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 RAD17O75943 681 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 HAUS5O94927 633 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 KRT19P08727 400 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 CDKN1CP49918 316 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 ELF3P78545 371 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 TMPRSS15P98073 1019 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 CUL3Q13618 768 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PREPLQ4J6C6 727 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 RGS9BPQ6ZS82 235 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 ERICH1Q86X53 443 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 GRK7Q8WTQ7 553 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PYROXD1Q8WU10 500 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PRPF31Q8WWY3 499 aaKnown RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 ATG4AQ8WYN0 398 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 PPWD1Q96BP3 646 aaKnown RBP5.77□□□□□ -1.49
LIMA1-203ENST00000547825 SLITRK6Q9H5Y7 841 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 GABBR1Q9UBS5 961 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 GINS2Q9Y248 185 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 FIS1Q9Y3D6 152 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 ROBO3Q96MS0 1386 aa5.77□□□□□ -1.49
LIMA1-203ENST00000547825 SSU72P8A0A1W2PR75 194 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 FAM187AA6NFU0 413 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 SPECC1L-ADORA2AF8WAN1 911 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 NVLO15381 856 aaKnown RBP5.76□□□□□ -1.49
LIMA1-203ENST00000547825 PIAS1O75925 651 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 DCTN3O75935 186 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 CPB1P15086 417 aa5.76□□□□□ -1.49
LIMA1-203ENST00000547825 USP11P51784 963 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms