RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 PIK3CDO00329 1044 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 STX7O15400 261 aaKnown RBP13.31□□□□□ -0.28
PTCH1-212ENST00000546744 KRT34O76011 436 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 MYO1DO94832 1006 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 EPHB2P29323 1055 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 ST13P50502 369 aaKnown RBP13.31□□□□□ -0.28
PTCH1-212ENST00000546744 BLVRAP53004 296 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 VCPP55072 806 aaKnown RBP13.31□□□□□ -0.28
PTCH1-212ENST00000546744 AMPD2Q01433 879 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 BNC1Q01954 994 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 DEPDC1Q5TB30 811 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 PDXDC2PQ6P474 469 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 RYBPQ8N488 228 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-212ENST00000546744 FEZF2Q8TBJ5 459 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 C19orf60Q96EN9 201 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 UNC45AQ9H3U1 944 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 PCDH9Q9HC56 1237 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 C8orf4Q9NR00 106 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 THAP1Q9NVV9 213 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 SLC5A4Q9NY91 659 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 DUSP10Q9Y6W6 482 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 CIITAP33076 1130 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 KCNK10P57789 538 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 IYDQ6PHW0 289 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 MOXD1Q6UVY6 613 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 KRT27Q7Z3Y8 459 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 TLK2Q86UE8 772 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 VTI1BQ9UEU0 232 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 GINS2Q9Y248 185 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 PPME1Q9Y570 386 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 CNTNAP5Q8WYK1 1306 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 KCNN4O15554 427 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 TDP2O95551 362 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 DMC1Q14565 340 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 DGUOKQ16854 277 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 SGSM1Q2NKQ1 1148 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 GALNT15Q8N3T1 639 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 S100ZQ8WXG8 99 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 SEPT1Q8WYJ6 367 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 MTMR8Q96EF0 704 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 TMEM117Q9H0C3 514 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 RMI1Q9H9A7 625 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 CYP2D7A0A087X1C5 515 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 PLEKP08567 350 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-212ENST00000546744 RPS6KA3P51812 740 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 EFNA5P52803 228 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 PTK2BQ14289 1009 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 KRT72Q14CN4 511 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 CNGA2Q16280 664 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 CDO1Q16878 200 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 BOLA3Q53S33 107 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 FAM102AQ5T9C2 384 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-212ENST00000546744 THEMIS2Q5TEJ8 643 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 ATG9AQ7Z3C6 839 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 DDIASQ8IXT1 998 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 PAFAH2Q99487 392 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 C9orf16Q9BUW7 83 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 C6orf203Q9P0P8 240 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-212ENST00000546744 DMTF1Q9Y222 760 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 MYBL2P10244 700 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 FASP25445 335 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 HNRNPH3P31942 346 aaKnown RBP13.3□□□□□ -0.28
PTCH1-212ENST00000546744 CDK7P50613 346 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 AQP5P55064 265 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 SEL1L3Q68CR1 1132 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 BORCS5Q969J3 196 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 MYLK2Q9H1R3 596 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 RRN3Q9NYV6 651 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 PCSK1NQ9UHG2 260 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 MAD2L2Q9UI95 211 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 TNS2Q63HR2 1409 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 PRR23D1E9PI22 279 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-212ENST00000546744 H3BNX3 289 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 MATN2O00339 956 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 PRR23D2P0DMB1 279 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-212ENST00000546744 RALAP11233 206 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 GTF2H1P32780 548 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 SLC16A2P36021 539 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 CHRNB3Q05901 458 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 KIF22Q14807 665 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 PPHLN1Q8NEY8 458 aaKnown RBP13.3□□□□□ -0.28
PTCH1-212ENST00000546744 ASAP3Q8TDY4 903 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 FAM213AQ9BRX8 229 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 TBC1D10AQ9BXI6 508 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 SQORQ9Y6N5 450 aa13.3□□□□□ -0.28
PTCH1-212ENST00000546744 C3orf70A6NLC5 250 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-212ENST00000546744 LZTS3O60299 673 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-212ENST00000546744 ME2P23368 584 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 NAB1Q13506 487 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 NANOGNBQ7Z5D8 188 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 BBS7Q8IWZ6 715 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 LRRC39Q96DD0 335 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 APOPT1Q96IL0 206 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 TMEM237Q96Q45 408 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 TMEM79Q9BSE2 394 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 ZNF518BQ9C0D4 1074 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 CEP44Q9C0F1 390 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 TASP1Q9H6P5 420 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 PCDHGB4Q9UN71 923 aa13.29□□□□□ -0.28
PTCH1-212ENST00000546744 SYNJ2BP-COX16A0A087WUM0 186 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms