RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CHST12Q9NRB3 414 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 ANKFY1Q9P2R3 1169 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 CNTN6Q9UQ52 1028 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 TRPV2Q9Y5S1 764 aa9.06□□□□□ -0.96
VPS29-203ENST00000546588 PTPRSQ13332 1948 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 GOLGA8IPA6NC78 632 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 LRRC53A6NM62 1247 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 GOLGA8JA6NMD2 632 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 EIF3CLB5ME19 914 aaKnown RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 F8VZ95 297 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 INPPL1O15357 1258 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 CCP110O43303 1012 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 ERLIN2O94905 339 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 KIF4AO95239 1232 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 CD4P01730 458 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 TUBB4AP04350 444 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 CLTAP09496 248 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 MSNP26038 577 aaKnown RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 SOX18P35713 384 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 TNFSF9P41273 254 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 ACOT2P49753 483 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 ZNF200P98182 395 aaPredicted RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 PKN2Q16513 984 aaKnown RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 KIZQ2M2Z5 673 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 UBXN11Q5T124 520 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 CCDC181Q5TID7 509 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 TDRD10Q5VZ19 366 aaKnown RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 ZNF280DQ6N043 979 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 FBXL19Q6PCT2 694 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 HFE2Q6ZVN8 426 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 IRF2BP2Q7Z5L9 587 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 RSPH3Q86UC2 560 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 CCAR2Q8N163 923 aaKnown RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 UBR7Q8N806 425 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 GLT1D1Q96MS3 346 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 EIF3CQ99613 913 aaKnown RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 ADPGKQ9BRR6 497 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 LSM14BQ9BX40 385 aaKnown RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 STK33Q9BYT3 514 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 PDCL3Q9H2J4 239 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 ZFYVE1Q9HBF4 777 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 FAM207AQ9NSI2 230 aaPredicted RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 DZANK1Q9NVP4 752 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 ARHGAP20Q9P2F6 1191 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 GPN3Q9UHW5 284 aaPredicted RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 FHOD1Q9Y613 1164 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 BZW2Q9Y6E2 419 aaKnown RBP9.05□□□□□ -0.96
VPS29-203ENST00000546588 MROH7Q68CQ1 1323 aa9.05□□□□□ -0.96
VPS29-203ENST00000546588 MYH10P35580 1976 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 COL4A4P53420 1690 aaPredicted RBP9.04□□□□□ -0.96
VPS29-203ENST00000546588 TLDC2A0PJX2 215 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 GOLGA6CA6NDK9 693 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 GOLGA6BA6NDN3 693 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 GOLGA6L9A6NEM1 432 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 J3QW42 95 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 SH3BP5O60239 455 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 VNN1O95497 513 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 ASS1P00966 412 aaKnown RBP9.04□□□□□ -0.96
VPS29-203ENST00000546588 CHRNA1P02708 482 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 SERPING1P05155 500 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 GOLGA6DP0CG33 693 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 HSPA8P11142 646 aaKnown RBP9.04□□□□□ -0.96
VPS29-203ENST00000546588 COL6A1P12109 1028 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 GCLMP48507 274 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 DOC2BQ14184 412 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 ZBTB6Q15916 424 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 ZFYVE27Q5T4F4 411 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 ZNF468Q5VIY5 522 aaPredicted RBP9.04□□□□□ -0.96
VPS29-203ENST00000546588 IQCEQ6IPM2 695 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 FBXO46Q6PJ61 603 aaPredicted RBP9.04□□□□□ -0.96
VPS29-203ENST00000546588 RAD9BQ6WBX8 426 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 CTU1Q7Z7A3 348 aaKnown RBP9.04□□□□□ -0.96
VPS29-203ENST00000546588 FAM228AQ86W67 206 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 CREBRFQ8IUR6 639 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 FAM126BQ8IXS8 530 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 EFCAB13Q8IY85 973 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 GOLM1Q8NBJ4 401 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 PHC3Q8NDX5 983 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 CAGE1Q8TC20 777 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 TAS1R2Q8TE23 839 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 SHC3Q92529 594 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 TAF4BQ92750 862 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 SEMA4DQ92854 862 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 ZNF333Q96JL9 665 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 FNBP1Q96RU3 617 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 MMRN2Q9H8L6 949 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 PDE11AQ9HCR9 933 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 ERVK-5Q9HDB9 667 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 RAB20Q9NX57 234 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 GOLGA6AQ9NYA3 693 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 UBP1Q9NZI7 540 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 AJAP1Q9UKB5 411 aaPredicted RBP9.04□□□□□ -0.96
VPS29-203ENST00000546588 NLRC5Q86WI3 1866 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 COL4A6Q14031 1691 aa9.04□□□□□ -0.96
VPS29-203ENST00000546588 A0A096LPE4 126 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 A0A1W2PPZ6 126 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 M0QZ92 97 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 ARVCFO00192 962 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 PES1O00541 588 aaKnown RBP9.03□□□□□ -0.96
VPS29-203ENST00000546588 ZNF623O75123 536 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms