RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CRTAC1Q9NQ79 661 aa16.98■□□□□ 0.31
PRPF40A-212ENST00000545856 TSPAN16Q9UKR8 245 aa16.98■□□□□ 0.31
PRPF40A-212ENST00000545856 CHD9Q3L8U1 2897 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 LILRB3O75022 631 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 MYBL1P10243 752 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 BRD2P25440 801 aaKnown RBP16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 RAB33AQ14088 237 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 PTPN14Q15678 1187 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 PKDCCQ504Y2 493 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 FAM109BQ6ICB4 259 aaPredicted RBP16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 GLYCTKQ8IVS8 523 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 SPPL3Q8TCT6 385 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 PCED1BQ96HM7 432 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 HSFY1Q96LI6 401 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 EMILIN2Q9BXX0 1053 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 DPEP3Q9H4B8 488 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 PCDH10Q9P2E7 1040 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 AFF4Q9UHB7 1163 aaKnown RBP16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 ADAMTS1Q9UHI8 967 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 NAGPAQ9UK23 515 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 NENFQ9UMX5 172 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 YBX2Q9Y2T7 364 aaKnown RBP16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 PCDHB5Q9Y5E4 795 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 TRIOBPQ9H2D6 2365 aa16.97■□□□□ 0.31
PRPF40A-212ENST00000545856 GRXCR1A8MXD5 290 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 DDX3XO00571 662 aaKnown RBP eCLIP16.96■□□□□ 0.311e-15■■□□□ 12.1
PRPF40A-212ENST00000545856 FSCN2O14926 492 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 RTN2O75298 545 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 ADH1AP07327 375 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 MMEP08473 750 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 FAM200BP0CF97 657 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 UNGP13051 313 aaPredicted RBP16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 CPB1P15086 417 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 NPR3P17342 541 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 CHRNB2P17787 502 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 DNAJB2P25686 324 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 NSFP46459 744 aaKnown RBP16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 NOMO3P69849 1222 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 CLEC16AQ2KHT3 1053 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 MDH1BQ5I0G3 518 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 PPP1R26Q5T8A7 1209 aaPredicted RBP16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 ALKBH5Q6P6C2 394 aaKnown RBP16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 CHRDL2Q6WN34 429 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 ZNF662Q6ZS27 426 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 TMC7Q7Z402 723 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 FAM35AQ86V20 835 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 SPATA2LQ8IUW3 424 aaPredicted RBP16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 FUKQ8N0W3 1084 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 ZNF461Q8TAF7 563 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 SLC2A14Q8TDB8 520 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 SLC20A1Q8WUM9 679 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 TFAP2BQ92481 460 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 MYLPFQ96A32 169 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 C17orf80Q9BSJ5 609 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 DUSP16Q9BY84 665 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 ISCUQ9H1K1 167 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 CSNK1G1Q9HCP0 422 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 DPP7Q9UHL4 492 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 STRIP2Q9ULQ0 834 aa16.96■□□□□ 0.31
PRPF40A-212ENST00000545856 A0A087X0T9 212 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 MYBPHLA2RUH7 354 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 GOLGA6L9A6NEM1 432 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 SOWAHDA6NJG2 315 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 M0QYV0 167 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 XPO1O14980 1071 aaKnown RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 TRIM66O15016 1216 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 MICAL2O94851 1124 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 PLEKP08567 350 aaPredicted RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 CCDC175P0C221 793 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 FAM228BP0C875 321 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 ACAT1P24752 427 aaKnown RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 ACADSBP45954 432 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 PLA2G4AP47712 749 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 RPL34P49207 117 aaKnown RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 GSCP56915 257 aaPredicted RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 PSMC1P62191 440 aaKnown RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 C1QBPQ07021 282 aaKnown RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 PRPF38BQ5VTL8 546 aaKnown RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 ELMSAN1Q6PJG2 1045 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 PHF13Q86YI8 300 aaPredicted RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 ZDHHC17Q8IUH5 632 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 C12orf29Q8N999 325 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 OLIG1Q8TAK6 271 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 POF1BQ8WVV4 589 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 TIFAQ96CG3 184 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 KCNF1Q9H3M0 494 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 DMAP1Q9NPF5 467 aaPredicted RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 KCND1Q9NSA2 647 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 WDR35Q9P2L0 1181 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 GTF3C4Q9UKN8 822 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 CDY1Q9Y6F8 540 aa16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 COL4A4P53420 1690 aaPredicted RBP16.95■□□□□ 0.3
PRPF40A-212ENST00000545856 ZSCAN12O43309 604 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 ABLIM3O94929 683 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 CALB1P05937 261 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 GPD2P43304 727 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 TUFMP49411 452 aaKnown RBP16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 ROR1Q01973 937 aa16.94■□□□□ 0.3
PRPF40A-212ENST00000545856 GPM6BQ13491 265 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms