RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-223ENST00000543658 SLC8B1Q6J4K2 584 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 PPP1R2P3Q6NXS1 205 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 TRIM72Q6ZMU5 477 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 IRF2BP2Q7Z5L9 587 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 NOP9Q86U38 636 aaKnown RBP12.61□□□□□ -0.39
DDB1-223ENST00000543658 FAM35AQ86V20 835 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 LRRC8AQ8IWT6 810 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 C12orf29Q8N999 325 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 SPPL2BQ8TCT7 592 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 SLC2A14Q8TDB8 520 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 TRIM44Q96DX7 344 aaPredicted RBP12.61□□□□□ -0.39
DDB1-223ENST00000543658 SMARCD1Q96GM5 515 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 PCED1BQ96HM7 432 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 NOX5Q96PH1 765 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 ZNF576Q9H609 170 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 ACP6Q9NPH0 428 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 CRTAC1Q9NQ79 661 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 TSPAN16Q9UKR8 245 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.61□□□□□ -0.39
DDB1-223ENST00000543658 NME7Q9Y5B8 376 aa12.61□□□□□ -0.39
DDB1-223ENST00000543658 ZNF638Q14966 1978 aaKnown RBP12.6□□□□□ -0.39
DDB1-223ENST00000543658 MYBPHLA2RUH7 354 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 SPDYE4A6NLX3 237 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 O00370 1275 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 AP1G2O75843 785 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 MICAL2O94851 1124 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 CALCAP01258 141 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 MMEP08473 750 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 SSTR3P32745 418 aaPredicted RBP12.6□□□□□ -0.39
DDB1-223ENST00000543658 EIF4A3P38919 411 aaKnown RBP12.6□□□□□ -0.39
DDB1-223ENST00000543658 SNX16P57768 344 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 ERVFC1P60507 584 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 ROR1Q01973 937 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 BST2Q10589 180 aaKnown RBP12.6□□□□□ -0.39
DDB1-223ENST00000543658 GPR17Q13304 367 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 TPGS2Q68CL5 300 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 FAM171BQ6P995 826 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 ELMSAN1Q6PJG2 1045 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 LCLAT1Q6UWP7 414 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 PASD1Q8IV76 773 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 TMEM35BQ8NCS4 154 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 SLC20A1Q8WUM9 679 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 FUBP3Q96I24 572 aaKnown RBP eCLIP12.6□□□□□ -0.39
DDB1-223ENST00000543658 PGLYRP2Q96PD5 576 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 HNRNPABQ99729 332 aaKnown RBP12.6□□□□□ -0.39
DDB1-223ENST00000543658 NHEJ1Q9H9Q4 299 aaPredicted RBP12.6□□□□□ -0.39
DDB1-223ENST00000543658 LUC7LQ9NQ29 371 aaKnown RBP12.6□□□□□ -0.39
DDB1-223ENST00000543658 KRT82Q9NSB4 513 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 ARHGAP20Q9P2F6 1191 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 NOCTQ9UK39 431 aaKnown RBP12.6□□□□□ -0.39
DDB1-223ENST00000543658 PCDHGC3Q9UN70 934 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 IRAK3Q9Y616 596 aa12.6□□□□□ -0.39
DDB1-223ENST00000543658 GREB1Q4ZG55 1949 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 WDR27A2RRH5 827 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 MTMR11A4FU01 709 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 C2orf71A6NGG8 1288 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 CLDN5O00501 218 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 FSCN2O14926 492 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 TRIM66O15016 1216 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 TEX28O15482 410 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 TBC1D4O60343 1298 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 LSM8O95777 96 aaKnown RBP12.59□□□□□ -0.39
DDB1-223ENST00000543658 GLUD1P00367 558 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 PLEKP08567 350 aaPredicted RBP12.59□□□□□ -0.39
DDB1-223ENST00000543658 SETSIPP0DME0 302 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 NPR3P17342 541 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 BDNFP23560 247 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 DNAJB1P25685 340 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 GRIK1P39086 918 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 NSFP46459 744 aaKnown RBP12.59□□□□□ -0.39
DDB1-223ENST00000543658 KIF11P52732 1056 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 FMO1Q01740 532 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 ADCY1Q08828 1119 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 MGAT5BQ3V5L5 792 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 LIN9Q5TKA1 542 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 HGSNATQ68CP4 663 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 WDR59Q6PJI9 974 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 RNF19BQ6ZMZ0 732 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 ZNF571Q7Z3V5 609 aaPredicted RBP12.59□□□□□ -0.39
DDB1-223ENST00000543658 PALB2Q86YC2 1186 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 SCN4BQ8IWT1 228 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 CCDC170Q8IYT3 715 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 MRPL43Q8N983 215 aaKnown RBP12.59□□□□□ -0.39
DDB1-223ENST00000543658 IPO4Q8TEX9 1081 aaKnown RBP12.59□□□□□ -0.39
DDB1-223ENST00000543658 TFAP2BQ92481 460 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 KLHL5Q96PQ7 755 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 CHP1Q99653 195 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 SEPT5Q99719 369 aaPredicted RBP12.59□□□□□ -0.39
DDB1-223ENST00000543658 LPIN3Q9BQK8 851 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 CLSTN3Q9BQT9 956 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 B3GNT5Q9BYG0 378 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 SYNCQ9H7C4 482 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 RXFP1Q9HBX9 757 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 ABCB6Q9NP58 842 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 DMAP1Q9NPF5 467 aaPredicted RBP12.59□□□□□ -0.39
DDB1-223ENST00000543658 AFF4Q9UHB7 1163 aaKnown RBP12.59□□□□□ -0.39
DDB1-223ENST00000543658 DPP7Q9UHL4 492 aa12.59□□□□□ -0.39
DDB1-223ENST00000543658 SOWAHDA6NJG2 315 aa12.58□□□□□ -0.4
DDB1-223ENST00000543658 PRRG1O14668 218 aa12.58□□□□□ -0.4
DDB1-223ENST00000543658 ARHGAP6O43182 974 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms