RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	PTPRS	Q13332	1948 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	RALGAPA2	Q2PPJ7	1873 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	MTMR11	A4FU01	709 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	AKR1B15	C9JRZ8	316 aa	Predicted RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	ABLIM3	O94929	683 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	GYPC	P04921	128 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	SRGAP2B	P0DMP2	458 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	ATF2	P15336	505 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	FOSL2	P15408	326 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	EPCAM	P16422	314 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	CDC25B	P30305	580 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	SSTR3	P32745	418 aa	Predicted RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	CLCN1	P35523	988 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	GRIK1	P39086	918 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	ALDH1A3	P47895	512 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	TUFM	P49411	452 aa	Known RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	PDE6C	P51160	858 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	CLCN4	P51793	760 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	ZNF132	P52740	706 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	ADK	P55263	362 aa	Known RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	SLC8A3	P57103	927 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	GOLGA8F	Q08AF8	430 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	GOLGA8DP	Q0D2H9	430 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	SKIV2L	Q15477	1246 aa	Known RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	CCDC85B	Q15834	202 aa	Predicted RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	GOLGA7B	Q2TAP0	167 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	TAF3	Q5VWG9	929 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	CCDC149	Q6ZUS6	474 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	SLC47A2	Q86VL8	602 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	OR8K1	Q8NGG5	319 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	SPPL2B	Q8TCT7	592 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	C2orf15	Q8WU43	125 aa	Known RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	PPM1E	Q8WY54	764 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	TFAP2B	Q92481	460 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	HNRNPAB	Q99729	332 aa	Known RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	ZNF518B	Q9C0D4	1074 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	TTYH3	Q9C0H2	523 aa		10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	SEPT11	Q9NVA2	429 aa	Known RBP	10.78	□□□□□ -0.68
CPSF7-221	ENST00000543545	TRIP11	Q15643	1979 aa		10.77	□□□□□ -0.68
CPSF7-221	ENST00000543545		M0QYV0	167 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	AP1G2	O75843	785 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	SOAT2	O75908	522 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	SEC24A	O95486	1093 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	FAM200B	P0CF97	657 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	CYP11B1	P15538	503 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	CYP2F1	P24903	491 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	ANXA13	P27216	316 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	RPL10A	P62906	217 aa	Known RBP	10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	KLHL30	Q0D2K2	578 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	HYAL1	Q12794	435 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	STIL	Q15468	1287 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	CNGA2	Q16280	664 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	TAF12	Q16514	161 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	DDR2	Q16832	855 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	PPM1L	Q5SGD2	360 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	ARHGAP17	Q68EM7	881 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	SMYD5	Q6GMV2	418 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	FAM35A	Q86V20	835 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	CNGA4	Q8IV77	575 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	FUK	Q8N0W3	1084 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	SLC7A14	Q8TBB6	771 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	UBA3	Q8TBC4	463 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	SLC22A17	Q8WUG5	538 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	ZNF606	Q8WXB4	792 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	CASP10	Q92851	521 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	SMARCD1	Q96GM5	515 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	FUBP3	Q96I24	572 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	PKMYT1	Q99640	499 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	RHOBTB2	Q9BYZ6	727 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	PLEKHA4	Q9H4M7	779 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	ABCB6	Q9NP58	842 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	MAN1C1	Q9NR34	630 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	KRT82	Q9NSB4	513 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	MAFF	Q9ULX9	164 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	CEP83	Q9Y592	693 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	HCFC2	Q9Y5Z7	792 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	TDRD15	B5MCY1	1934 aa	Known RBP	10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545	SCN1A	P35498	2009 aa		10.77	□□□□□ -0.69
CPSF7-221	ENST00000543545		O00370	1275 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	NCK2	O43639	380 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	MFAP3L	O75121	409 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	MICAL2	O94851	1124 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	LRG1	P02750	347 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	C8A	P07357	584 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	HAPLN1	P10915	354 aa	Predicted RBP	10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	SKIL	P12757	684 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	POU3F3	P20264	500 aa	Predicted RBP	10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	TNFAIP3	P21580	790 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	MAP3K7CL	P57077	242 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	TBX2	Q13207	712 aa	Predicted RBP	10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	VEPH1	Q14D04	833 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	CFAP221	Q4G0U5	840 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	TDRD12	Q587J7	1177 aa	Known RBP	10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	SDHAF4	Q5VUM1	108 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	DENND1B	Q6P3S1	775 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	LILRA6	Q6PI73	481 aa		10.76	□□□□□ -0.69
CPSF7-221	ENST00000543545	LCLAT1	Q6UWP7	414 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms