RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 CSH2P0DML3 217 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 GCFC2P16383 781 aaKnown RBP10.28□□□□□ -0.76
YBX3-211ENST00000541351 IGFBP6P24592 240 aaPredicted RBP10.28□□□□□ -0.76
YBX3-211ENST00000541351 GRM5P41594 1212 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 GRIA2P42262 883 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 CCR10P46092 362 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 PCBP4P57723 403 aaKnown RBP10.28□□□□□ -0.76
YBX3-211ENST00000541351 NLRP5P59047 1200 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 SOX4Q06945 474 aaPredicted RBP10.28□□□□□ -0.76
YBX3-211ENST00000541351 PTPRNQ16849 979 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 C4orf17Q53FE4 359 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 XKR4Q5GH76 650 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 ATF7IP2Q5U623 682 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 OVOS1Q6IE37 1185 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 XKR5Q6UX68 686 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 SLC41A1Q8IVJ1 513 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 SLFN12Q8IYM2 578 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 KIAA1958Q8N8K9 716 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 ATAD1Q8NBU5 361 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 TTC16Q8NEE8 873 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 YTHDC1Q96MU7 727 aaKnown RBP10.28□□□□□ -0.76
YBX3-211ENST00000541351 ACAP3Q96P50 834 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 MTMR9Q96QG7 549 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 IL21Q9HBE4 155 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 SH3GLB2Q9NR46 395 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 CALCOCO1Q9P1Z2 691 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 PAXBP1Q9Y5B6 917 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 RBM8AQ9Y5S9 174 aaKnown RBP10.28□□□□□ -0.76
YBX3-211ENST00000541351 TAF6LQ9Y6J9 622 aa10.28□□□□□ -0.76
YBX3-211ENST00000541351 DOPEY2Q9Y3R5 2298 aa10.27□□□□□ -0.76
YBX3-211ENST00000541351 BCAT2O15382 392 aaPredicted RBP10.27□□□□□ -0.77
YBX3-211ENST00000541351 PRPF3O43395 683 aaKnown RBP10.27□□□□□ -0.77
YBX3-211ENST00000541351 XPOTO43592 962 aaKnown RBP10.27□□□□□ -0.77
YBX3-211ENST00000541351 KAT7O95251 611 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 OR4Q2P0C623 313 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 LIG1P18858 919 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 TYMPP19971 482 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 HSPA4P34932 840 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 NLRP12P59046 1061 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 TEAD4Q15561 434 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 ZNF77Q15935 545 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 HLA-BQ31612 363 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 TBC1D25Q3MII6 688 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 ARHGAP40Q5TG30 622 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 NAIF1Q69YI7 327 aaPredicted RBP10.27□□□□□ -0.77
YBX3-211ENST00000541351 NCAPH2Q6IBW4 605 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 DSTYKQ6XUX3 929 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 DHX32Q7L7V1 743 aaKnown RBP10.27□□□□□ -0.77
YBX3-211ENST00000541351 MARCH9Q86YJ5 346 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 SPPL2BQ8TCT7 592 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 DYDC2Q96IM9 177 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 LPIN3Q9BQK8 851 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 CXCL16Q9H2A7 254 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 CRISPLD1Q9H336 500 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 GPRC5CQ9NQ84 441 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 KCNK4Q9NYG8 393 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 CNTN3Q9P232 1028 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 WRAP73Q9P2S5 460 aaPredicted RBP10.27□□□□□ -0.77
YBX3-211ENST00000541351 VAV3Q9UKW4 847 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 NAP1L2Q9ULW6 460 aaPredicted RBP10.27□□□□□ -0.77
YBX3-211ENST00000541351 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.27□□□□□ -0.77
YBX3-211ENST00000541351 WNT6Q9Y6F9 365 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 STK36Q9NRP7 1315 aa10.27□□□□□ -0.77
YBX3-211ENST00000541351 KIAA1549LQ6ZVL6 1849 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 DFNA5O60443 496 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 USO1O60763 962 aaKnown RBP10.26□□□□□ -0.77
YBX3-211ENST00000541351 ADH1CP00326 375 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 ODC1P11926 461 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 XRCC6P12956 609 aaKnown RBP eCLIP10.26□□□□□ -0.77
YBX3-211ENST00000541351 HOXB2P14652 356 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 HNRNPLP14866 589 aaKnown RBP eCLIP10.26□□□□□ -0.77
YBX3-211ENST00000541351 TCF3P15923 654 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 ATP2B1P20020 1258 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 OPRD1P41143 372 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 NAMPTP43490 491 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 CCT8P50990 548 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 VAC14Q08AM6 782 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 RESTQ13127 1097 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 UBAP2LQ14157 1087 aaKnown RBP10.26□□□□□ -0.77
YBX3-211ENST00000541351 CTTNQ14247 550 aaKnown RBP10.26□□□□□ -0.77
YBX3-211ENST00000541351 KCNB1Q14721 858 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 SF3A1Q15459 793 aaKnown RBP10.26□□□□□ -0.77
YBX3-211ENST00000541351 INF2Q27J81 1249 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 C6orf132Q5T0Z8 1188 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 RNF20Q5VTR2 975 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 TXNDC8Q6A555 127 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 GALNT17Q6IS24 598 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 ALKAL1Q6UXT8 129 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 CHD1LQ86WJ1 897 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 LSMEM2Q8N112 164 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 FAM177A1Q8N128 213 aaPredicted RBP10.26□□□□□ -0.77
YBX3-211ENST00000541351 CADM4Q8NFZ8 388 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 DNASE2BQ8WZ79 361 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 IFT74Q96LB3 600 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 LRRC2Q9BYS8 371 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 SEMA4CQ9C0C4 833 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 MIR1-1HGQ9H1L0 117 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 IL25Q9H293 177 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 TRPC7Q9HCX4 862 aa10.26□□□□□ -0.77
YBX3-211ENST00000541351 ARHGEF4Q9NR80 690 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms