RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 HERC5Q9UII4 1024 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 DRG1Q9Y295 367 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 LYPLA2O95372 231 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 SGSM1Q2NKQ1 1148 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 ZACNQ401N2 412 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 ALYREFQ86V81 257 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 PHF13Q86YI8 300 aaPredicted RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 SMC1BQ8NDV3 1235 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 ZNF606Q8WXB4 792 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 OXNAD1Q96HP4 312 aaPredicted RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 VCPIP1Q96JH7 1222 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 FBXL18Q96ME1 805 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 RMDN3Q96TC7 470 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 ACSS3Q9H6R3 686 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 APOBEC3GQ9HC16 384 aaKnown RBP11.8□□□□□ -0.52
SYNE1-237ENST00000539504 PCSK1NQ9UHG2 260 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 UBIAD1Q9Y5Z9 338 aa11.8□□□□□ -0.52
SYNE1-237ENST00000539504 EXTL3O43909 919 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 GARTP22102 1010 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 BRD2P25440 801 aaKnown RBP11.79□□□□□ -0.52
SYNE1-237ENST00000539504 PSMA2P25787 234 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 TMPRSS15P98073 1019 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 FAAP100Q0VG06 881 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 MTERF2Q49AM1 385 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 ARHGEF16Q5VV41 709 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 ADGRD1Q6QNK2 874 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 RFX6Q8HWS3 928 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 MFN1Q8IWA4 741 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 BANPQ8N9N5 519 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 FAM71DQ8N9W8 422 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 CPT1BQ92523 772 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 CFAP36Q96G28 342 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 THTPAQ9BU02 230 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 NMUR2Q9GZQ4 415 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 ZCWPW1Q9H0M4 648 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 POLR3FQ9H1D9 316 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-237ENST00000539504 USP21Q9UK80 565 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 ANGPTL2Q9UKU9 493 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 MAGEA13PA6NCF6 341 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 TMEM191CA6NGB0 347 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 LRRIQ4A6NIV6 560 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 COPEO14579 308 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 TMEM191BP0C7N4 346 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 AMPD1P23109 780 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 KRT76Q01546 638 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 OASLQ15646 514 aaKnown RBP11.79□□□□□ -0.52
SYNE1-237ENST00000539504 SWSAP1Q6NVH7 229 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 CCNJLQ8IV13 435 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 PPM1NQ8N819 430 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 TMEM174Q8WUU8 243 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 PTCD3Q96EY7 689 aaKnown RBP11.79□□□□□ -0.52
SYNE1-237ENST00000539504 ZBTB45Q96K62 511 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-237ENST00000539504 TCRBV7S3A2A0A539 114 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 STAM2O75886 525 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 ICAM1P05362 532 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 CALB1P05937 261 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 ITGAVP06756 1048 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 RPL22P35268 128 aaKnown RBP11.79□□□□□ -0.52
SYNE1-237ENST00000539504 WNT7BP56706 349 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 RPS6P62753 249 aaKnown RBP11.79□□□□□ -0.52
SYNE1-237ENST00000539504 OCRLQ01968 901 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 NBPF20Q3BBV1 942 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 SCARA5Q6ZMJ2 495 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 SYTL5Q8TDW5 730 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-237ENST00000539504 ZNF184Q99676 751 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-237ENST00000539504 SLC13A1Q9BZW2 595 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 ETAA1Q9NY74 926 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 NUB1Q9Y5A7 615 aa11.79□□□□□ -0.52
SYNE1-237ENST00000539504 CD19P15391 556 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 ACO1P21399 889 aaKnown RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 HSD17B4P51659 736 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 NRLP54845 237 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 DRICH1Q6PGQ1 229 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 ARID3BQ8IVW6 561 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 APLFQ8IW19 511 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 SLC25A41Q8N5S1 370 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 TMEM35BQ8NCS4 154 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 TCHPQ9BT92 498 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 CALN1Q9BXU9 219 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 ZNF341Q9BYN7 854 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 DDX56Q9NY93 547 aaKnown RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 STX18Q9P2W9 335 aaKnown RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 SLC9A2Q9UBY0 812 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 PCDHA10Q9Y5I2 948 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 ADAMTSL1Q8N6G6 1762 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 SFNP31947 248 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 ELK3P41970 407 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 ZNF200P98182 395 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 OGDHQ02218 1023 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 AP1B1Q10567 949 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 KBTBD12Q3ZCT8 623 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 CMPK2Q5EBM0 449 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 SPDYAQ5MJ70 313 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 C1orf146Q5VVC0 180 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 GALNT15Q8N3T1 639 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 NKD2Q969F2 451 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 MASTLQ96GX5 879 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 SERAC1Q96JX3 654 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 CLPTM1LQ96KA5 538 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms