RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 JAMLQ86YT9 394 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 TMEM35BQ8NCS4 154 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 MDM1Q8TC05 714 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 RAPGEF5Q92565 580 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 PMM1Q92871 262 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 MAGOHBQ96A72 148 aaKnown RBP11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ACAP3Q96P50 834 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ERP44Q9BS26 406 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ZNF518BQ9C0D4 1074 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 ELOVL4Q9GZR5 314 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 PARVAQ9NVD7 372 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 CYTH4Q9UIA0 394 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 SCINQ9Y6U3 715 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 NRCAMQ92823 1304 aa11.35□□□□□ -0.59
CLIP1-210ENST00000538120 SMIM35A0A1B0GVV1 85 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 EIF4BP23588 611 aaKnown RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 CTGFP29279 349 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 POLR2BP30876 1174 aaKnown RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 MAP2K2P36507 400 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 YWHAEP62258 255 aaKnown RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 OGDHQ02218 1023 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 LLGL1Q15334 1064 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 SKIV2LQ15477 1246 aaKnown RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 PROX2Q3B8N5 592 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 SAPCD2Q86UD0 394 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 SLC4A11Q8NBS3 891 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 FAM114A2Q9NRY5 505 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 AGAP1Q9UPQ3 857 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 UTP11Q9Y3A2 253 aaKnown RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 C2CD2Q9Y426 696 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 CILPO75339 1184 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 NPTXRO95502 500 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 CALB1P05937 261 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 PAEPP09466 180 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 CYP2C9P11712 490 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 COILP38432 576 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 PPP2R2AP63151 447 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 ZNF200P98182 395 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 RGMBQ6NW40 437 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 CCDC121Q6ZUS5 278 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 TMC3Q7Z5M5 1100 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 ANKS1BQ7Z6G8 1248 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 C12orf50Q8NA57 414 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 LRRC45Q96CN5 670 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 HPDLQ96IR7 371 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 SEC16BQ96JE7 1060 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 CCDC114Q96M63 670 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 ZMAT2Q96NC0 199 aaKnown RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 OSMRQ99650 979 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 ZBED2Q9BTP6 218 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 EIF2AQ9BY44 585 aaKnown RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 GCOM2Q9BZD3 368 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-210ENST00000538120 ZDHHC18Q9NUE0 388 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 DPP3Q9NY33 737 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 GINS2Q9Y248 185 aa11.34□□□□□ -0.59
CLIP1-210ENST00000538120 STAU1O95793 577 aaKnown RBP11.33□□□□□ -0.6
CLIP1-210ENST00000538120 DARSP14868 501 aaKnown RBP11.33□□□□□ -0.6
CLIP1-210ENST00000538120 MAN1A1P33908 653 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 LACTBP83111 547 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-210ENST00000538120 BEX3Q00994 111 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 DHX9Q08211 1270 aaKnown RBP11.33□□□□□ -0.6
CLIP1-210ENST00000538120 PTPN20Q4JDL3 420 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 CCDC137Q6PK04 289 aaKnown RBP11.33□□□□□ -0.6
CLIP1-210ENST00000538120 ZDHHC24Q6UX98 284 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 SDR16C5Q8N3Y7 309 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 ARFGAP2Q8N6H7 521 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 RAB17Q9H0T7 212 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 LHX5Q9H2C1 402 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 CXorf56Q9H5V9 222 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 LRRC19Q9H756 370 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 CYP3A43Q9HB55 503 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 HAUS2Q9NVX0 235 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 SNTG2Q9NY99 539 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 TJP2Q9UDY2 1190 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 ITGA11Q9UKX5 1188 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 DOCK3Q8IZD9 2030 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 GOLGA6L7A0A1B0GV03 622 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 TREHO43280 583 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 PSTPIP1O43586 416 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 SLC10A3P09131 477 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 CD19P15391 556 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 TCF4P15884 667 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 KCNJ1P48048 391 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 DRG2P55039 364 aaKnown RBP11.33□□□□□ -0.6
CLIP1-210ENST00000538120 RBP5P82980 135 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 DCAF4L1Q3SXM0 396 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 KRT71Q3SY84 523 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 CYP4A22Q5TCH4 519 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 FAM228AQ86W67 206 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 ERICH1Q86X53 443 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 RHOT1Q8IXI2 618 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 TMEM40Q8WWA1 233 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 DNAJB3Q8WWF6 145 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 ADPGKQ9BRR6 497 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 GRHL1Q9NZI5 618 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 MTUS1Q9ULD2 1270 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 USTQ9Y2C2 406 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 ATP8A1Q9Y2Q0 1164 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 SNX24Q9Y343 169 aa11.33□□□□□ -0.6
CLIP1-210ENST00000538120 FAM155AB1AL88 458 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms