RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 SIX4Q9UIU6 781 aa14.07□□□□□ -0.16
RTN3-207ENST00000536011 MAGED2Q9UNF1 606 aaPredicted RBP14.07□□□□□ -0.16
RTN3-207ENST00000536011 GABRDO14764 452 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 POLR2DO15514 142 aaKnown RBP14.06□□□□□ -0.16
RTN3-207ENST00000536011 NOL4O94818 638 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 F13A1P00488 732 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 HMGA1P17096 107 aaKnown RBP14.06□□□□□ -0.16
RTN3-207ENST00000536011 ACAT1P24752 427 aaKnown RBP14.06□□□□□ -0.16
RTN3-207ENST00000536011 MAGEA11P43364 429 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 PDE6CP51160 858 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 CDR1P51861 262 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 ZNF268Q14587 947 aaPredicted RBP14.06□□□□□ -0.16
RTN3-207ENST00000536011 SOWAHAQ2M3V2 549 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 TSSK4Q6SA08 328 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 EPM2AIP1Q7L775 607 aaPredicted RBP14.06□□□□□ -0.16
RTN3-207ENST00000536011 MON1AQ86VX9 555 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 GPIHBP1Q8IV16 184 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 CEP57L1Q8IYX8 460 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 MAB21L3Q8N8X9 362 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 GOLGA5Q8TBA6 731 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 ZFYVE19Q96K21 471 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 AGPAT3Q9NRZ7 376 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 TMLHEQ9NVH6 421 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 GTSE1Q9NYZ3 720 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 GMEB2Q9UKD1 530 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 GTF3C4Q9UKN8 822 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 CDH9Q9ULB4 789 aa14.06□□□□□ -0.16
RTN3-207ENST00000536011 PVALEFA0A1B0GWK0 134 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 PAPSS2O95340 614 aaPredicted RBP14.05□□□□□ -0.16
RTN3-207ENST00000536011 F11P03951 625 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 DLATP10515 647 aaKnown RBP14.05□□□□□ -0.16
RTN3-207ENST00000536011 TNNI1P19237 187 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 SDHBP21912 280 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 CYP2F1P24903 491 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 SOX9P48436 509 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 CYP2J2P51589 502 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 DDR2Q16832 855 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 FOXD4L5Q5VV16 416 aaPredicted RBP14.05□□□□□ -0.16
RTN3-207ENST00000536011 LMBRD2Q68DH5 695 aaPredicted RBP14.05□□□□□ -0.16
RTN3-207ENST00000536011 VSTM1Q6UX27 236 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 XXYLT1Q8NBI6 393 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 GLIS3Q8NEA6 775 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 OR5B17Q8NGF7 314 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 FOXD4L4Q8WXT5 416 aaPredicted RBP14.05□□□□□ -0.16
RTN3-207ENST00000536011 HPS3Q969F9 1004 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 MYRFLQ96LU7 910 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 LRRC3BQ96PB8 259 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 MMS19Q96T76 1030 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 PKMYT1Q99640 499 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 CGRRF1Q99675 332 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 SYT15Q9BQS2 421 aa14.05□□□□□ -0.16
RTN3-207ENST00000536011 MAGEC2Q9UBF1 373 aaPredicted RBP14.05□□□□□ -0.16
RTN3-207ENST00000536011 DNAH14Q0VDD8 3507 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 CACNA1AO00555 2505 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 TRAV19A0A0A6YYK7 116 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 CKMP06732 381 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 USP17L7P0C7H9 530 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 TDGF1P13385 188 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 WARSP23381 471 aaKnown RBP14.04□□□□□ -0.16
RTN3-207ENST00000536011 ANXA13P27216 316 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 CNR2P34972 360 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 GPR15P49685 360 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 TNNC1P63316 161 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 TNK2Q07912 1038 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 CYP24A1Q07973 514 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 GRSF1Q12849 480 aaKnown RBP eCLIP14.04□□□□□ -0.16
RTN3-207ENST00000536011 PSMD6Q15008 389 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 PON2Q15165 354 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 PDGFRLQ15198 375 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 BMT2Q1RMZ1 405 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 RESP18Q5W5W9 173 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 TXNDC8Q6A555 127 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 FAM171BQ6P995 826 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 TRAPPC11Q7Z392 1133 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 LIMS2Q7Z4I7 341 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 TMEM150AQ86TG1 271 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 SCN4BQ8IWT1 228 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 TTC8Q8TAM2 541 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 USP13Q92995 863 aaPredicted RBP14.04□□□□□ -0.16
RTN3-207ENST00000536011 SMG9Q9H0W8 520 aaKnown RBP14.04□□□□□ -0.16
RTN3-207ENST00000536011 SNX25Q9H3E2 840 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 GKN1Q9NS71 199 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 PTPRJQ12913 1337 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 GPR179Q6PRD1 2367 aa14.04□□□□□ -0.16
RTN3-207ENST00000536011 TRIM66O15016 1216 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 ATG13O75143 517 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 FAM163BP0C2L3 166 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 PFKLP17858 780 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 HOXD13P35453 343 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 SATB1Q01826 763 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 LMNB2Q03252 620 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 FAM160A1Q05DH4 1040 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 EHHADHQ08426 723 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 TRPC3Q13507 836 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 RUNX3Q13761 415 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 CCINQ13939 588 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 PUM1Q14671 1186 aaKnown RBP eCLIP14.03□□□□□ -0.16
RTN3-207ENST00000536011 KCNB1Q14721 858 aa14.03□□□□□ -0.16
RTN3-207ENST00000536011 FOXD4L6Q3SYB3 417 aaPredicted RBP14.03□□□□□ -0.16
RTN3-207ENST00000536011 LAIR1Q6GTX8 287 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms