RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 CSF2RAP15509 400 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 PTPN1P18031 435 aaKnown RBP21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 EN2P19622 333 aaPredicted RBP21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 RPL7AP62424 266 aaKnown RBP21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 IKBKEQ14164 716 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 WHAMMP3Q1A5X7 153 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 NPAS4Q8IUM7 802 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 C18orf8Q96DM3 657 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 HES6Q96HZ4 224 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 SUSD3Q96L08 255 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 NRDE2Q9H7Z3 1164 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 CYP11A1P05108 521 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 COMTP21964 271 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 PDE4CQ08493 712 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 PMF1Q6P1K2 205 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 DNAJC24Q6P3W2 148 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 CREG2Q8IUH2 290 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 MNS1Q8NEH6 495 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 RTP3Q9BQQ7 232 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 SYNCQ9H7C4 482 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 CRTAC1Q9NQ79 661 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 STRIP2Q9ULQ0 834 aa21.49■■□□□ 1.03
TNFRSF1A-205ENST00000534885 PIK3R2O00459 728 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 KIAA0355O15063 1070 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 UPP2O95045 317 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 RFC2P35250 354 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 RGS7P49802 495 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 XYLT1Q86Y38 959 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 FUKQ8N0W3 1084 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 C3orf20Q8ND61 904 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 SLC35F5Q8WV83 523 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 SYT15Q9BQS2 421 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 DNAI2Q9GZS0 605 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 LTBP2Q14767 1821 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 TBKBP1A7MCY6 615 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 GOLGA8SH3BPF8 625 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 TMEM189-UBE2V1I3L0A0 370 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 CLDN5O00501 218 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 KCNK3O14649 394 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 HOXA2O43364 376 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 RAG1P15918 1043 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 GTF2F1P35269 517 aaKnown RBP eCLIP21.48■■□□□ 1.031e-6■■■■□ 22.9
TNFRSF1A-205ENST00000534885 GABRB2P47870 512 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 MDH1BQ5I0G3 518 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 ANKRD52Q8NB46 1076 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 FEZF2Q8TBJ5 459 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 MCEEQ96PE7 176 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 SMARCAL1Q9NZC9 954 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 EHD2Q9NZN4 543 aa21.48■■□□□ 1.03
TNFRSF1A-205ENST00000534885 LAMA2P24043 3122 aaKnown RBP21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 E5RJQ4 531 aa21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 MYO1FO00160 1098 aa21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 PDE2AO00408 941 aaPredicted RBP21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 PAX3P23760 479 aa21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 PPP1R15BQ5SWA1 713 aa21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 PAQR9Q6ZVX9 377 aa21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 UBE2Q1Q7Z7E8 422 aa21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 TSC1Q92574 1164 aa21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 V9GYY5 206 aaPredicted RBP21.47■■□□□ 1.03
TNFRSF1A-205ENST00000534885 MYBPHLA2RUH7 354 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 NRP1O14786 923 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 DDX3YO15523 660 aaKnown RBP21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 BCAT1P54687 386 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 BST2Q10589 180 aaKnown RBP21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 NAA30Q147X3 362 aaPredicted RBP21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 MSANTD4Q8NCY6 345 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 MS4A14Q96JA4 679 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 HNRNPABQ99729 332 aaKnown RBP21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 TMEM191CA6NGB0 347 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 CTIFO43310 598 aaKnown RBP21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 GABBR2O75899 941 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 CAPN2P17655 700 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 MARCKSL1P49006 195 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 DAB2IPQ5VWQ8 1189 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 METTL23Q86XA0 190 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 CEP112Q8N8E3 955 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 IPO4Q8TEX9 1081 aaKnown RBP21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 PRDM10Q9NQV6 1147 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 DSEQ9UL01 958 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 CDH9Q9ULB4 789 aa21.46■■□□□ 1.03
TNFRSF1A-205ENST00000534885 SPOPO43791 374 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 TADA3O75528 432 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 SETSIPP0DME0 302 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 PCSK1P29120 753 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 PBX3P40426 434 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 GSCP56915 257 aaPredicted RBP21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 BCAR1P56945 870 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 OVOS1Q6IE37 1185 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 MFSD5Q6N075 450 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 DCUN1D2Q6PH85 259 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 KRT35Q92764 455 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 CD101Q93033 1021 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 PCED1BQ96HM7 432 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 PIWIL1Q96J94 861 aaKnown RBP21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 SELENOOQ9BVL4 669 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 VWA8A3KMH1 1905 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 ALPK3Q96L96 1907 aa21.45■■□□□ 1.02
TNFRSF1A-205ENST00000534885 SLC11A1P49279 550 aa21.44■■□□□ 1.02
TNFRSF1A-205ENST00000534885 OGDHQ02218 1023 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms