RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NDST1P52848 882 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 NLRP12P59046 1061 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 DDR2Q16832 855 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 DCAF17Q5H9S7 520 aaPredicted RBP13.84□□□□□ -0.19
VPS28-216ENST00000533806 TCERG1LQ5VWI1 586 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 SCARA5Q6ZMJ2 495 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 C4orf50Q6ZRC1 276 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 PAQR9Q6ZVX9 377 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 ITIH5Q86UX2 942 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 SPATA2LQ8IUW3 424 aaPredicted RBP13.84□□□□□ -0.19
VPS28-216ENST00000533806 UBALD2Q8IYN6 164 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 B3GALNT2Q8NCR0 500 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 LMO3Q8TAP4 145 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 GPR152Q8TDT2 470 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 WHAMMQ8TF30 809 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 GIPC2Q8TF65 315 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 ING5Q8WYH8 240 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 FGF14Q92915 247 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 ASIC4Q96FT7 647 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 SPATA17Q96L03 361 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 MYRFLQ96LU7 910 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 CEP295NLQ96MC4 621 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 ZSWIM3Q96MP5 696 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 RPP25Q9BUL9 199 aaKnown RBP13.84□□□□□ -0.19
VPS28-216ENST00000533806 C1QTNF1Q9BXJ1 281 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 B3GNT5Q9BYG0 378 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 SMOC2Q9H3U7 446 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 MAGEC2Q9UBF1 373 aaPredicted RBP13.84□□□□□ -0.19
VPS28-216ENST00000533806 HMGXB4Q9UGU5 601 aa13.84□□□□□ -0.19
VPS28-216ENST00000533806 NOL4O94818 638 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 F11P03951 625 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 MYL4P12829 197 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 BDNFP23560 247 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 FCARP24071 287 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 CACNA2D1P54289 1103 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 RPL10AP62906 217 aaKnown RBP13.83□□□□□ -0.2
VPS28-216ENST00000533806 TDGQ13569 410 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 MTMR3Q13615 1198 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 MDH1BQ5I0G3 518 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 CT47A1Q5JQC4 288 aaPredicted RBP13.83□□□□□ -0.2
VPS28-216ENST00000533806 SDHAF4Q5VUM1 108 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 TRIM67Q6ZTA4 783 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 TATDN2Q93075 761 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 MCRS1Q96EZ8 462 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 TRMT2BQ96GJ1 504 aaKnown RBP13.83□□□□□ -0.2
VPS28-216ENST00000533806 C8orf48Q96LL4 319 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 TWNKQ96RR1 684 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 IMPG2Q9BZV3 1241 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 FAM124BQ9H5Z6 455 aaPredicted RBP13.83□□□□□ -0.2
VPS28-216ENST00000533806 TRPV4Q9HBA0 871 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.83□□□□□ -0.21e-6■■■■■ 37.9
VPS28-216ENST00000533806 NUMBLQ9Y6R0 609 aa13.83□□□□□ -0.2
VPS28-216ENST00000533806 A0A1W2PRU2 124 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 P4HA2O15460 535 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 CILPO75339 1184 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 FGF19O95750 216 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 GJA1P17302 382 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 WEE1P30291 646 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 CYP27A1Q02318 531 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 SIGLEC14Q08ET2 396 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 VEPH1Q14D04 833 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 TEAD2Q15562 447 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 CCDC40Q4G0X9 1142 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 FAM78AQ5JUQ0 283 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 ACOT1Q86TX2 421 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 FUKQ8N0W3 1084 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 TNIP3Q96KP6 325 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 ASB16Q96NS5 453 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 ARID3AQ99856 593 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 ZNF518BQ9C0D4 1074 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 DUSP12Q9UNI6 340 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 TECTAO75443 2155 aa13.82□□□□□ -0.2
VPS28-216ENST00000533806 SLC38A8A6NNN8 435 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 CLDN5O00501 218 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 NARSO43776 548 aaKnown RBP13.81□□□□□ -0.2
VPS28-216ENST00000533806 ECI2O75521 394 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 FGFR1OPO95684 399 aaKnown RBP13.81□□□□□ -0.2
VPS28-216ENST00000533806 MBD3O95983 291 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 CSH1P0DML2 217 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 CSH2P0DML3 217 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 GABRR2P28476 465 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 KCNH2Q12809 1159 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 STXBP5Q5T5C0 1151 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 TANGO2Q6ICL3 276 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 MTSS1LQ765P7 747 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 BMP8AQ7Z5Y6 402 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 UBR7Q8N806 425 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 C12orf29Q8N999 325 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 STKLD1Q8NE28 680 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 ST13P5Q8NFI4 369 aaPredicted RBP13.81□□□□□ -0.2
VPS28-216ENST00000533806 SMARCD2Q92925 531 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 TTLL2Q9BWV7 592 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 GPR88Q9GZN0 384 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 ELOVL4Q9GZR5 314 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 CSNK1G1Q9HCP0 422 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 CISHQ9NSE2 258 aa13.81□□□□□ -0.2
VPS28-216ENST00000533806 FAM86C2PA6NEL3 165 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 SOBPA7XYQ1 873 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 PRR33A8MZF0 331 aa13.8□□□□□ -0.2
VPS28-216ENST00000533806 F8VP50 259 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms