RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 AARSP49588 968 aaKnown RBP eCLIP21.85■■□□□ 1.091e-6■■■■■ 36.1
VPS28-209ENST00000528142 PDCD11Q14690 1871 aaKnown RBP21.85■■□□□ 1.09
VPS28-209ENST00000528142 TRIM71Q2Q1W2 868 aaKnown RBP21.85■■□□□ 1.09
VPS28-209ENST00000528142 ARHGAP17Q68EM7 881 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 RNF180Q86T96 592 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 JAMLQ86YT9 394 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 CRYBG2Q8N1P7 616 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 DAPK3O43293 454 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 INHAP05111 366 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 SSR1P43307 286 aaKnown RBP21.85■■□□□ 1.09
VPS28-209ENST00000528142 FNTAP49354 379 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 ACLYP53396 1101 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 LILRA4P59901 499 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 PTK7Q13308 1070 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 KLF1Q13351 362 aaPredicted RBP21.85■■□□□ 1.09
VPS28-209ENST00000528142 LLGL1Q15334 1064 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 SV2CQ496J9 727 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 DUPD1Q68J44 220 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 CCDC137Q6PK04 289 aaKnown RBP21.85■■□□□ 1.09
VPS28-209ENST00000528142 ANKS1BQ7Z6G8 1248 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 TTC30AQ86WT1 665 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 MAIP1Q8WWC4 291 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 ERP44Q9BS26 406 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 RAB17Q9H0T7 212 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 ACBD3Q9H3P7 528 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 DPEP3Q9H4B8 488 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 TRIM17Q9Y577 477 aa21.85■■□□□ 1.09
VPS28-209ENST00000528142 DNAH12Q6ZR08 3092 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 A8MXQ7 604 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 HCRTO43612 131 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 ATP13A4Q4VNC1 1196 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 ZNF618Q5T7W0 954 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 MRPL10Q7Z7H8 261 aaKnown RBP21.84■■□□□ 1.09
VPS28-209ENST00000528142 MREGQ8N565 214 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 ARFGAP1Q8N6T3 406 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 TSEN2Q8NCE0 465 aaKnown RBP21.84■■□□□ 1.09
VPS28-209ENST00000528142 RUNDC3BQ96NL0 473 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 NEUROG2Q9H2A3 272 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 METTL5Q9NRN9 209 aaKnown RBP21.84■■□□□ 1.09
VPS28-209ENST00000528142 FAM114A2Q9NRY5 505 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 TRMT13Q9NUP7 481 aaKnown RBP21.84■■□□□ 1.09
VPS28-209ENST00000528142 PADI3Q9ULW8 664 aa21.84■■□□□ 1.09
VPS28-209ENST00000528142 RALAP11233 206 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 PSMA2P25787 234 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 OAS2P29728 719 aaKnown RBP21.83■■□□□ 1.09
VPS28-209ENST00000528142 CD52P31358 61 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 GNL1P36915 607 aaPredicted RBP21.83■■□□□ 1.09
VPS28-209ENST00000528142 DRG2P55039 364 aaKnown RBP21.83■■□□□ 1.09
VPS28-209ENST00000528142 GPS2Q13227 327 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 FAM26DQ5JW98 314 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 HACE1Q8IYU2 909 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 RCOR2Q8IZ40 523 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 APPL2Q8NEU8 664 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 IPO4Q8TEX9 1081 aaKnown RBP21.83■■□□□ 1.09
VPS28-209ENST00000528142 TRAIPQ9BWF2 469 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 FAM49BQ9NUQ9 324 aa21.83■■□□□ 1.09
VPS28-209ENST00000528142 SETSIPP0DME0 302 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 LMO2P25791 158 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 MLH1P40692 756 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 HLTFQ14527 1009 aaKnown RBP eCLIP21.83■■□□□ 1.08
VPS28-209ENST00000528142 DSC3Q14574 896 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 LPIN1Q14693 890 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 TXNRD3NBQ6F5E7 133 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 AGMOQ6ZNB7 445 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 TOP6BLQ8N6T0 577 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 SLC35F5Q8WV83 523 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 GAD1Q99259 594 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 LPIN3Q9BQK8 851 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 SLC4A5Q9BY07 1137 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 OSBPL8Q9BZF1 889 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 MIS12Q9H081 205 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 SLC38A7Q9NVC3 462 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 MIOSQ9NXC5 875 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 GIT1Q9Y2X7 761 aa21.83■■□□□ 1.08
VPS28-209ENST00000528142 E5RJQ4 531 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 AGPSO00116 658 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 TULP2O00295 520 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 MGEA5O60502 916 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 ZNF623O75123 536 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 GHRP10912 638 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 GJC1P36383 396 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 AFF1P51825 1210 aaKnown RBP21.82■■□□□ 1.08
VPS28-209ENST00000528142 PMF1Q6P1K2 205 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 CCDC50Q8IVM0 306 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 EMC1Q8N766 993 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 C1orf54Q8WWF1 131 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 SLCO2A1Q92959 643 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 LPPQ93052 612 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 DPH5Q9H2P9 285 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 RASAL2Q9UJF2 1139 aa21.82■■□□□ 1.08
VPS28-209ENST00000528142 PODXLO00592 558 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 PDGFRBP09619 1106 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 FAM163BP0C2L3 166 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 WARSP23381 471 aaKnown RBP21.81■■□□□ 1.08
VPS28-209ENST00000528142 GRK4P32298 578 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 LHX8Q68G74 356 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 POLNQ7Z5Q5 900 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 TMEM110Q86TL2 294 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 SH3TC2Q8TF17 1288 aa21.81■■□□□ 1.08
VPS28-209ENST00000528142 STK32AQ8WU08 396 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms