RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 GSPT2Q8IYD1 628 aaKnown RBP19.98■□□□□ 0.79
VPS28-207ENST00000526977 COLGALT2Q8IYK4 626 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 KRT35Q92764 455 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 CD101Q93033 1021 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 PAAF1Q9BRP4 392 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 IL23AQ9NPF7 189 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 BAIAP3O94812 1187 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 DDHD2O94830 711 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 MYBL1P10243 752 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 RRM1P23921 792 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 NOMO3P69849 1222 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 MON1BQ7L1V2 547 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 CPNE8Q86YQ8 564 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 PASD1Q8IV76 773 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 SENP8Q96LD8 212 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 MRPL45Q9BRJ2 306 aaKnown RBP19.98■□□□□ 0.79
VPS28-207ENST00000526977 CACNG4Q9UBN1 327 aa19.98■□□□□ 0.79
VPS28-207ENST00000526977 MED7O43513 233 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 FGGP02679 453 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 AMHP03971 560 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 GNL1P36915 607 aaPredicted RBP19.97■□□□□ 0.79
VPS28-207ENST00000526977 ZNF211Q13398 564 aaPredicted RBP19.97■□□□□ 0.79
VPS28-207ENST00000526977 PPIGQ13427 754 aaKnown RBP eCLIP19.97■□□□□ 0.796e-8■□□□□ 10.8
VPS28-207ENST00000526977 DSTYKQ6XUX3 929 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 TMEM86AQ8N2M4 240 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 UBL4BQ8N7F7 174 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 SLC4A11Q8NBS3 891 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 C3orf58Q8NDZ4 430 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 OR6B3Q8NGW1 331 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 TOP1MTQ969P6 601 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 TRIM11Q96F44 468 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 RNPC3Q96LT9 517 aaKnown RBP19.97■□□□□ 0.79
VPS28-207ENST00000526977 ZSWIM1Q9BR11 485 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 HTATIP2Q9BUP3 242 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 ELOVL4Q9GZR5 314 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 GDF3Q9NR23 364 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 TDRD15B5MCY1 1934 aaKnown RBP19.97■□□□□ 0.79
VPS28-207ENST00000526977 ARHGEF37A1IGU5 675 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 CCDC188H7C350 402 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 RAD51CO43502 376 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 MARCKSL1P49006 195 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 C2CD6Q53TS8 623 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 PHLDB2Q86SQ0 1253 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 AENQ8WTP8 325 aaKnown RBP19.97■□□□□ 0.79
VPS28-207ENST00000526977 SNX25Q9H3E2 840 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 PLEKHA4Q9H4M7 779 aa19.97■□□□□ 0.79
VPS28-207ENST00000526977 TMEM189-UBE2V1I3L0A0 370 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 HEXIM1O94992 359 aaKnown RBP19.96■□□□□ 0.79
VPS28-207ENST00000526977 VDRP11473 427 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 WARSP23381 471 aaKnown RBP19.96■□□□□ 0.79
VPS28-207ENST00000526977 TNFRSF8P28908 595 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 SMC1AQ14683 1233 aaKnown RBP19.96■□□□□ 0.79
VPS28-207ENST00000526977 PHF13Q86YI8 300 aaPredicted RBP19.96■□□□□ 0.79
VPS28-207ENST00000526977 IFT20Q8IY31 132 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 ADGRF2Q8IZF7 708 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 KBTBD7Q8WVZ9 684 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 VCPIP1Q96JH7 1222 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 HEXIM2Q96MH2 286 aaKnown RBP19.96■□□□□ 0.79
VPS28-207ENST00000526977 TWNKQ96RR1 684 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 EPB41L5Q9HCM4 733 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 ST7Q9NRC1 585 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 NR2E1Q9Y466 385 aa19.96■□□□□ 0.79
VPS28-207ENST00000526977 TBKBP1A7MCY6 615 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 A8MXQ7 604 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 SART1O43290 800 aaKnown RBP19.95■□□□□ 0.78
VPS28-207ENST00000526977 DGKIO75912 1065 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 UPP2O95045 317 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 ALDH2P05091 517 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 CD19P15391 556 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 GUCY2DQ02846 1103 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 PTP4A2Q12974 167 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 TIGD5Q53EQ6 642 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 PPP1R2P3Q6NXS1 205 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 LLGL2Q6P1M3 1020 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 SPATA18Q8TC71 538 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 ADAM22Q9P0K1 906 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 HMGXB4Q9UGU5 601 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 PCDHGC3Q9UN70 934 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 PCDHA3Q9Y5H8 950 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 ZSCAN5CA6NGD5 496 aaPredicted RBP19.95■□□□□ 0.78
VPS28-207ENST00000526977 ACRP10323 421 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 IGFBP6P24592 240 aaPredicted RBP19.95■□□□□ 0.78
VPS28-207ENST00000526977 OR1G1P47890 313 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 LHX1P48742 406 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 FPGSQ05932 587 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 AADACL2Q6P093 401 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 CD300LGQ6UXG3 332 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 LRRC43Q8N309 656 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 GDAP1L1Q96MZ0 367 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 TRIM7Q9C029 511 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 DDX47Q9H0S4 455 aaKnown RBP19.95■□□□□ 0.78
VPS28-207ENST00000526977 NRDE2Q9H7Z3 1164 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 ANAPC7Q9UJX3 599 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 DSEQ9UL01 958 aa19.95■□□□□ 0.78
VPS28-207ENST00000526977 MICAL3Q7RTP6 2002 aa19.94■□□□□ 0.78
VPS28-207ENST00000526977 M0QZQ0 153 aa19.94■□□□□ 0.78
VPS28-207ENST00000526977 GABRDO14764 452 aa19.94■□□□□ 0.78
VPS28-207ENST00000526977 SPOPO43791 374 aa19.94■□□□□ 0.78
VPS28-207ENST00000526977 ODC1P11926 461 aa19.94■□□□□ 0.78
VPS28-207ENST00000526977 BRD2P25440 801 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms