RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 MDH1BQ5I0G3 518 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 ISM2Q6H9L7 571 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 VITQ6UXI7 678 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 ARID3BQ8IVW6 561 aaPredicted RBP22.33■■□□□ 1.17
VPS28-203ENST00000524521 SPATA20Q8TB22 786 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 MYLPFQ96A32 169 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 EEF2KMTQ96G04 330 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 BRD9Q9H8M2 597 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 VRTNQ9H8Y1 702 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 CHMP5Q9NZZ3 219 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 NME7Q9Y5B8 376 aa22.33■■□□□ 1.17
VPS28-203ENST00000524521 HEPACAM2A8MVW5 462 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 TRIM49P0CI25 452 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 TRIM49CP0CI26 452 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 PSMC3P17980 439 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 PTPN1P18031 435 aaKnown RBP22.32■■□□□ 1.16
VPS28-203ENST00000524521 BDNFP23560 247 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 NUBP1P53384 320 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 MLF2Q15773 248 aaPredicted RBP22.32■■□□□ 1.16
VPS28-203ENST00000524521 PHLDB3Q6NSJ2 640 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 SCARA5Q6ZMJ2 495 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 MFSD6LQ8IWD5 586 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 MYCBPAPQ8TBZ2 947 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 E2F7Q96AV8 911 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 MKNK1Q9BUB5 465 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 TASP1Q9H6P5 420 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 SMYD3Q9H7B4 428 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 MUC6Q6W4X9 2439 aa22.32■■□□□ 1.16
VPS28-203ENST00000524521 SLC38A8A6NNN8 435 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 DPYSL4O14531 572 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 CETN3O15182 167 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 HLA-DRAP01903 254 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 F11P03951 625 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 GDI1P31150 447 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 GRIK1P39086 918 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 MAGEA11P43364 429 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 RAP1GAPP47736 663 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 GCLMP48507 274 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 PTPN5P54829 565 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 NLRP12P59046 1061 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 STARD6P59095 220 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 ELOA2Q8IYF1 753 aaPredicted RBP22.31■■□□□ 1.16
VPS28-203ENST00000524521 DEPDC1BQ8WUY9 529 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 PCED1BQ96HM7 432 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 TSG101Q99816 390 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 GTPBP4Q9BZE4 634 aaKnown RBP22.31■■□□□ 1.16
VPS28-203ENST00000524521 DPEP3Q9H4B8 488 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 MMRN2Q9H8L6 949 aa22.31■■□□□ 1.16
VPS28-203ENST00000524521 GALR2O43603 387 aaPredicted RBP22.3■■□□□ 1.16
VPS28-203ENST00000524521 P4HA1P13674 534 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 ANP32AP39687 249 aaKnown RBP22.3■■□□□ 1.16
VPS28-203ENST00000524521 PIK3CAP42336 1068 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 NHLH1Q02575 133 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 PRKCQQ04759 706 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 PPP3CAQ08209 521 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 TCF15Q12870 199 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 COBLL1Q53SF7 1204 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 VSTM1Q6UX27 236 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 TMEM150AQ86TG1 271 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 YAF2Q8IY57 180 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 TAF4BQ92750 862 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 IRF7Q92985 503 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 RSPRY1Q96DX4 576 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 SLC46A2Q9BY10 475 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.3■■□□□ 1.16
VPS28-203ENST00000524521 HEBP1Q9NRV9 189 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 UXTQ9UBK9 157 aaPredicted RBP22.3■■□□□ 1.16
VPS28-203ENST00000524521 SIT1Q9Y3P8 196 aa22.3■■□□□ 1.16
VPS28-203ENST00000524521 ZNF263O14978 683 aa22.29■■□□□ 1.16
VPS28-203ENST00000524521 NOL4O94818 638 aa22.29■■□□□ 1.16
VPS28-203ENST00000524521 ANKRD40Q6AI12 368 aa22.29■■□□□ 1.16
VPS28-203ENST00000524521 SPOPLQ6IQ16 392 aa22.29■■□□□ 1.16
VPS28-203ENST00000524521 ADSSL1Q8N142 457 aa22.29■■□□□ 1.16
VPS28-203ENST00000524521 B3GALNT2Q8NCR0 500 aa22.29■■□□□ 1.16
VPS28-203ENST00000524521 MRPS31Q92665 395 aaKnown RBP22.29■■□□□ 1.16
VPS28-203ENST00000524521 FOXQ1Q9C009 403 aa22.29■■□□□ 1.16
VPS28-203ENST00000524521 SDCBP2Q9H190 292 aa22.29■■□□□ 1.16
VPS28-203ENST00000524521 NCANO14594 1321 aa22.29■■□□□ 1.16
VPS28-203ENST00000524521 KANSL1LA0AUZ9 987 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 H0Y858 1186 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 ASS1P00966 412 aaKnown RBP22.28■■□□□ 1.16
VPS28-203ENST00000524521 DCNP07585 359 aaKnown RBP22.28■■□□□ 1.16
VPS28-203ENST00000524521 EPB41P11171 864 aaKnown RBP22.28■■□□□ 1.16
VPS28-203ENST00000524521 CD72P21854 359 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 ANXA13P27216 316 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 ENPEPQ07075 957 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 STIM1Q13586 685 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 TXNDC8Q6A555 127 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 TPRG1Q6ZUI0 275 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 MAB21L3Q8N8X9 362 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 DNASE1L2Q92874 299 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 TRMT2BQ96GJ1 504 aaKnown RBP22.28■■□□□ 1.16
VPS28-203ENST00000524521 MYRFLQ96LU7 910 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 IMPG2Q9BZV3 1241 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 MAN1B1Q9UKM7 699 aa22.28■■□□□ 1.16
VPS28-203ENST00000524521 WEE1P30291 646 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 PMS1P54277 932 aaKnown RBP22.27■■□□□ 1.16
VPS28-203ENST00000524521 FKBP3Q00688 224 aaKnown RBP22.27■■□□□ 1.16
VPS28-203ENST00000524521 UBXN2BQ14CS0 331 aa22.27■■□□□ 1.16
VPS28-203ENST00000524521 CMTM8Q8IZV2 173 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms