RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MRC1P22897 1456 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 SNRPAP09012 282 aaKnown RBP12.21□□□□□ -0.45
SYNPO-204ENST00000519664 STAG3L1P0CL83 205 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 GNL1P36915 607 aaPredicted RBP12.21□□□□□ -0.45
SYNPO-204ENST00000519664 PRKCIP41743 596 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 GEMIN4P57678 1058 aaKnown RBP12.21□□□□□ -0.45
SYNPO-204ENST00000519664 SPOCD1Q6ZMY3 1216 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 SHISA4Q96DD7 197 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 WWP1Q9H0M0 922 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 SLC4A7Q9Y6M7 1214 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 CACNA1FO60840 1977 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 KPNA7A9QM74 516 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 NOL4O94818 638 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 ETS1P14921 441 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 PECAM1P16284 738 aaPredicted RBP12.21□□□□□ -0.45
SYNPO-204ENST00000519664 TCN1P20061 433 aaPredicted RBP12.21□□□□□ -0.45
SYNPO-204ENST00000519664 HNRNPH3P31942 346 aaKnown RBP12.21□□□□□ -0.45
SYNPO-204ENST00000519664 TSPY1Q01534 308 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 YWHAHQ04917 246 aaPredicted RBP12.21□□□□□ -0.45
SYNPO-204ENST00000519664 LAMTOR4Q0VGL1 99 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 CHI3L2Q15782 390 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 NBPF20Q3BBV1 942 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 HSP90AA5PQ58FG0 334 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 BTBD8Q5XKL5 378 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 RXFP2Q8WXD0 754 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 PABPC5Q96DU9 382 aaKnown RBP12.21□□□□□ -0.45
SYNPO-204ENST00000519664 ZNF560Q96MR9 790 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 FAM129AQ9BZQ8 928 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 KIAA1683Q9H0B3 1180 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 RANBP17Q9H2T7 1088 aaKnown RBP12.21□□□□□ -0.45
SYNPO-204ENST00000519664 DPP3Q9NY33 737 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 PAK5Q9P286 719 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 HEY2Q9UBP5 337 aa12.21□□□□□ -0.45
SYNPO-204ENST00000519664 PFDN6O15212 129 aa12.21□□□□□ -0.46
SYNPO-204ENST00000519664 RFC1P35251 1148 aaPredicted RBP12.21□□□□□ -0.46
SYNPO-204ENST00000519664 UGCGQ16739 394 aa12.21□□□□□ -0.46
SYNPO-204ENST00000519664 LRRN4Q8WUT4 740 aa12.21□□□□□ -0.46
SYNPO-204ENST00000519664 ABTB1Q969K4 478 aaPredicted RBP12.21□□□□□ -0.46
SYNPO-204ENST00000519664 ZNF669Q96BR6 464 aaPredicted RBP12.21□□□□□ -0.46
SYNPO-204ENST00000519664 CGRRF1Q99675 332 aa12.21□□□□□ -0.46
SYNPO-204ENST00000519664 MAGEB2O15479 319 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 PEX10O60683 326 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 DGKIO75912 1065 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 DDNO94850 711 aaPredicted RBP12.2□□□□□ -0.46
SYNPO-204ENST00000519664 GNAT1P11488 350 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 ACO1P21399 889 aaKnown RBP12.2□□□□□ -0.46
SYNPO-204ENST00000519664 MUTP22033 750 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 SLC35G1Q2M3R5 365 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 FAM83AQ86UY5 434 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 PRELID2Q8N945 189 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 PCDHA3Q9Y5H8 950 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 ASAP2O43150 1006 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 PSTPIP1O43586 416 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 NCAM1P13591 858 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 CCNG2Q16589 344 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 ACAD11Q709F0 780 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 THEM5Q8N1Q8 247 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 FGD4Q96M96 766 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 SERPINI1Q99574 410 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 PLEKHA5Q9HAU0 1116 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 MID2Q9UJV3 735 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 USP18Q9UMW8 372 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 ZNF286BP0CG31 522 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 EEF1B2P24534 225 aaKnown RBP12.2□□□□□ -0.46
SYNPO-204ENST00000519664 FAM172AQ8WUF8 416 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 DCLK3Q9C098 648 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 CHCHD3Q9NX63 227 aaKnown RBP12.2□□□□□ -0.46
SYNPO-204ENST00000519664 NDE1Q9NXR1 346 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 WHRNQ9P202 907 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 FAF1Q9UNN5 650 aaPredicted RBP12.2□□□□□ -0.46
SYNPO-204ENST00000519664 TNPO2O14787 897 aaKnown RBP12.2□□□□□ -0.46
SYNPO-204ENST00000519664 CYP3A4P08684 503 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 ZFXP17010 805 aaPredicted RBP12.2□□□□□ -0.46
SYNPO-204ENST00000519664 EPHB2P29323 1055 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 PTPN11Q06124 597 aaPredicted RBP12.2□□□□□ -0.46
SYNPO-204ENST00000519664 USP10Q14694 798 aaKnown RBP12.2□□□□□ -0.46
SYNPO-204ENST00000519664 MORF4L2Q15014 288 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 MPZL3Q6UWV2 235 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 DENND5BQ6ZUT9 1274 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 AMIGO3Q86WK7 504 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 EXD1Q8NHP7 514 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 PAFAH2Q99487 392 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 FAM8A1Q9UBU6 413 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 L3MBTL1Q9Y468 752 aa12.2□□□□□ -0.46
SYNPO-204ENST00000519664 M0QYT0 321 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 GNGT2O14610 69 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 AIM2O14862 343 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 NKRFO15226 690 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 GJB1P08034 283 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 INSRRP14616 1297 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 KPNA2P52292 529 aaKnown RBP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 NLRP9Q7RTR0 991 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 SCUBE3Q8IX30 993 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 P2RX7Q99572 595 aaKnown RBP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 CYP3A7-CYP3A51PA0A087WV96 503 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 CCL15-CCL14A0A0B4J2E2 113 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 CCDC22O60826 627 aa12.19□□□□□ -0.46
SYNPO-204ENST00000519664 ENO3P13929 434 aaPredicted RBP12.19□□□□□ -0.46
SYNPO-204ENST00000519664 CYP3A7P24462 503 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms