RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 BAP1Q92560 729 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 TMA16Q96EY4 203 aaKnown RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 SH2D3AQ9BRG2 576 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 POLR3FQ9H1D9 316 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 DEFB129Q9H1M3 183 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 NMRK1Q9NWW6 199 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 GTSE1Q9NYZ3 720 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 MAD2L2Q9UI95 211 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 ADGRA3Q8IWK6 1321 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 AKAP10O43572 662 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 PAEPP09466 180 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 SRGAP2BP0DMP2 458 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 CYP11B2P19099 503 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 TBXAS1P24557 533 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 AQP5P55064 265 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 NFIAQ12857 509 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 TRIM67Q6ZTA4 783 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 LPCAT2Q7L5N7 544 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 IRF2BP1Q8IU81 584 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 CROCCP3Q8IVE0 287 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 FAM13CQ8NE31 585 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 SHCBP1LQ9BZQ2 653 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 LRMDAQ9H2I8 198 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 JPH1Q9HDC5 661 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 NGRNQ9NPE2 291 aaKnown RBP11.73□□□□□ -0.53
TCOF1-211ENST00000513346 GALNT8Q9NY28 637 aa11.73□□□□□ -0.53
TCOF1-211ENST00000513346 PIK3R2O00459 728 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 DDX3XO00571 662 aaKnown RBP eCLIP11.72□□□□□ -0.539e-17■■□□□ 11.8
TCOF1-211ENST00000513346 RARAP10276 462 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 TXNP10599 105 aaKnown RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 GZMAP12544 262 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 EPHX2P34913 555 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 NLRP11P59045 1033 aaKnown RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF699Q32M78 642 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 FAM43BQ6ZT52 329 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 SLC25A41Q8N5S1 370 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 OXNAD1Q96HP4 312 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 EBF2Q9HAK2 575 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 CPSF3Q9UKF6 684 aaKnown RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 AURKCQ9UQB9 309 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 FAM205AQ6ZU69 1335 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 GTPBP10A4D1E9 387 aaKnown RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 CETPP11597 493 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 STAT5BP51692 787 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 ATXN3P54252 364 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 BCAR1P56945 870 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 HAUS6Q7Z4H7 955 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 GIPC2Q8TF65 315 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 ZC3H15Q8WU90 426 aaKnown RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 DDX50Q9BQ39 737 aaKnown RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 CCDC28BQ9BUN5 200 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 ZC4H2Q9NQZ6 224 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 SOX13Q9UN79 622 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 MAGED2Q9UNF1 606 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 TAC1P20366 129 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 FLT3P36888 993 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 INPP1P49441 399 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 CDK16Q00536 496 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 INPP5AQ14642 412 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 ARHGEF26Q96DR7 871 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 ZCWPW1Q9H0M4 648 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 TUFT1Q9NNX1 390 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 CLIC5Q9NZA1 410 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 CDY2AQ9Y6F7 541 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 CDY1Q9Y6F8 540 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 C16orf96A6NNT2 1141 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 KLRC4O43908 158 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 BGNP21810 368 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 CCNG2Q16589 344 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 CDO1Q16878 200 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 PPP6R3Q5H9R7 873 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF398Q8TD17 642 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 SCFD1Q8WVM8 642 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 LENG1Q96BZ8 264 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 PAFAH2Q99487 392 aa11.72□□□□□ -0.53
TCOF1-211ENST00000513346 C20orf96Q9NUD7 363 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-211ENST00000513346 WTIPA6NIX2 430 aaPredicted RBP11.71□□□□□ -0.53
TCOF1-211ENST00000513346 ARHGEF9O43307 516 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 SERPINB1P30740 379 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 ACAD10Q6JQN1 1059 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 MRPL4Q9BYD3 311 aaKnown RBP11.71□□□□□ -0.53
TCOF1-211ENST00000513346 APPL1Q9UKG1 709 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 UBE4BO95155 1302 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 MROH7Q68CQ1 1323 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 PIK3CDO00329 1044 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF263O14978 683 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 TBX3O15119 743 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 HUS1O60921 280 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 NR3C2P08235 984 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 HMOX2P30519 316 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 CCDC15Q0P6D6 951 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 ZC2HC1CQ53FD0 456 aaPredicted RBP11.71□□□□□ -0.53
TCOF1-211ENST00000513346 PCNX4Q63HM2 1172 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 RAB6BQ9NRW1 208 aa11.71□□□□□ -0.53
TCOF1-211ENST00000513346 NEMP1O14524 444 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 PYGMP11217 842 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 RPA1P27694 616 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 ATICP31939 592 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 MTM1Q13496 603 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 PKN2Q16513 984 aaKnown RBP11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms