RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 COL1A1P02452 1464 aaPredicted RBP8.78□□□□□ -1
LIMCH1-216ENST00000512820 LOC100653049A0A140TA62 436 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 MAGEA13PA6NCF6 341 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 KRT34O76011 436 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ETS1P14921 441 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ADORA2BP29275 332 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ESRRGP62508 458 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ORC1Q13415 861 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 NFIL3Q16649 462 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 MFSD5Q6N075 450 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 KCNV1Q6PIU1 500 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ARMCX2Q7L311 632 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 PID1Q7Z2X4 250 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 EMC1Q8N766 993 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 CCNYL1Q8N7R7 359 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 SEPT1Q8WYJ6 367 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 SPATA33Q96N06 139 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 RNPEPL1Q9HAU8 725 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 CISHQ9NSE2 258 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 SPDYE2BA6NHP3 402 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 MAP3K6O95382 1288 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 LSM8O95777 96 aaKnown RBP8.78□□□□□ -1
LIMCH1-216ENST00000512820 SPDYE6P0CI01 402 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 NAMPTP43490 491 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 MYL6P60660 151 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 PGM5Q15124 567 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 TRIP10Q15642 601 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ACCSLQ4AC99 568 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 CDR2LQ86X02 465 aaPredicted RBP8.78□□□□□ -1
LIMCH1-216ENST00000512820 HACE1Q8IYU2 909 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 CERKQ8TCT0 537 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 INPP5DQ92835 1189 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 PGBD4Q96DM1 585 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ZBTB10Q96DT7 871 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 FRMD8Q9BZ67 464 aaPredicted RBP8.78□□□□□ -1
LIMCH1-216ENST00000512820 PXMP2Q9NR77 195 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 MAP3K20Q9NYL2 800 aaKnown RBP8.78□□□□□ -1
LIMCH1-216ENST00000512820 A8MXQ7 604 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 NLRP11P59045 1033 aaKnown RBP8.78□□□□□ -1
LIMCH1-216ENST00000512820 DEUP1Q05D60 604 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 NBPF20Q3BBV1 942 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ATP13A4Q4VNC1 1196 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 SNX30Q5VWJ9 437 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 NIPA1Q7RTP0 329 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 CATSPER4Q7RTX7 472 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 SLC26A11Q86WA9 606 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 LRRC71Q8N4P6 559 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 RNF169Q8NCN4 708 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ABTB1Q969K4 478 aaPredicted RBP8.78□□□□□ -1
LIMCH1-216ENST00000512820 KIF12Q96FN5 646 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 KREMEN1Q96MU8 473 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 BTBD10Q9BSF8 475 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 KIAA1683Q9H0B3 1180 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 FAM49AQ9H0Q0 323 aaPredicted RBP8.78□□□□□ -1
LIMCH1-216ENST00000512820 ZNRF3Q9ULT6 936 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 F8VP50 259 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 PTGIRP43119 386 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 MAMLD1Q13495 774 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ATF7IP2Q5U623 682 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 SCUBE1Q8IWY4 988 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 MAGEC3Q8TD91 643 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 TMEM109Q9BVC6 243 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 BCAS3Q9H6U6 928 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 SUDS3Q9H7L9 328 aaPredicted RBP8.78□□□□□ -1
LIMCH1-216ENST00000512820 SLCO1B3Q9NPD5 702 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 ANLNQ9NQW6 1124 aa8.78□□□□□ -1
LIMCH1-216ENST00000512820 RPTORQ8N122 1335 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 E2F8A0AVK6 867 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 C5orf60A6NFR6 353 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 M0QZ92 97 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 LCP1P13796 627 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ELK3P41970 407 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 AQP5P55064 265 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ARL13BQ3SXY8 428 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 DACT2Q5SW24 774 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 JADE1Q6IE81 842 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 STYK1Q6J9G0 422 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ZNF280CQ8ND82 737 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 PPP1R36Q96LQ0 422 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 SHCBP1LQ9BZQ2 653 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ZNF408Q9H9D4 720 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 PFDN4Q9NQP4 134 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 CYP39A1Q9NYL5 469 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 GRHL1Q9NZI5 618 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 E7ENQ6 273 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 OGTO15294 1046 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 GH1P01241 217 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 SERPINB3P29508 390 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 SLC45A4Q5BKX6 768 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 RARS2Q5T160 578 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 APLFQ8IW19 511 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 CEP70Q8NHQ1 597 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 CMTM5Q96DZ9 223 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 TBC1D10AQ9BXI6 508 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 C10orf88Q9H8K7 445 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 SAR1AQ9NR31 198 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 GTSE1Q9NYZ3 720 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 ADA2Q9NZK5 511 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 PDP2Q9P2J9 529 aa8.77□□□□□ -1.01
LIMCH1-216ENST00000512820 NUB1Q9Y5A7 615 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms