RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 PLCB3Q01970 1234 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 ORC1Q13415 861 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 MAPRE1Q15691 268 aaKnown RBP16.06■□□□□ 0.16
SCLT1-209ENST00000511426 LRRC38Q5VT99 294 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 WSCD1Q658N2 575 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 ARCQ7LC44 396 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 C12orf29Q8N999 325 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 SPATA4Q8NEY3 305 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 CAPZA3Q96KX2 299 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 FAM193BQ96PV7 902 aaPredicted RBP16.06■□□□□ 0.16
SCLT1-209ENST00000511426 CPXM1Q96SM3 734 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 ACBD6Q9BR61 282 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.06■□□□□ 0.16
SCLT1-209ENST00000511426 GOLPH3Q9H4A6 298 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 DDX43Q9NXZ2 648 aaKnown RBP16.06■□□□□ 0.16
SCLT1-209ENST00000511426 LRFN2Q9ULH4 789 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 PACSIN2Q9UNF0 486 aaPredicted RBP16.06■□□□□ 0.16
SCLT1-209ENST00000511426 NME7Q9Y5B8 376 aa16.06■□□□□ 0.16
SCLT1-209ENST00000511426 CCDC188H7C350 402 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 EFCAB14O75071 495 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 KRT3P12035 628 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 DESP17661 470 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 PTPN1P18031 435 aaKnown RBP16.05■□□□□ 0.16
SCLT1-209ENST00000511426 CXCR5P32302 372 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 PLA2G4AP47712 749 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 RWDD2BP57060 319 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 PSMC1P62191 440 aaKnown RBP16.05■□□□□ 0.16
SCLT1-209ENST00000511426 TIGD5Q53EQ6 642 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 GLE1Q53GS7 698 aaKnown RBP16.05■□□□□ 0.16
SCLT1-209ENST00000511426 CNKSR3Q6P9H4 555 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 NECAB2Q7Z6G3 386 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 TTC30AQ86WT1 665 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 XYLT1Q86Y38 959 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 COLGALT2Q8IYK4 626 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 MMGT1Q8N4V1 131 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 C3orf58Q8NDZ4 430 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 TMEM106CQ9BVX2 250 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 TBC1D13Q9NVG8 400 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 TDRD15B5MCY1 1934 aaKnown RBP16.05■□□□□ 0.16
SCLT1-209ENST00000511426 XPO1O14980 1071 aaKnown RBP16.05■□□□□ 0.16
SCLT1-209ENST00000511426 PFKMP08237 780 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 MCM3P25205 808 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 LMO2P25791 158 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 PEX5P50542 639 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 LBX1P52954 281 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 RNASELQ05823 741 aaKnown RBP16.05■□□□□ 0.16
SCLT1-209ENST00000511426 OSTM1Q86WC4 334 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 RHOT1Q8IXI2 618 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 CRIPAKQ8N1N5 446 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 THEM5Q8N1Q8 247 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 PSMB7Q99436 277 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 SYT15Q9BQS2 421 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 TMEM175Q9BSA9 504 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 DPEP3Q9H4B8 488 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 TMEM39AQ9NV64 488 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 CYTH4Q9UIA0 394 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 PCDHB8Q9UN66 801 aa16.05■□□□□ 0.16
SCLT1-209ENST00000511426 TARSL2A2RTX5 802 aaKnown RBP16.04■□□□□ 0.16
SCLT1-209ENST00000511426 SYN3O14994 580 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 CEP104O60308 925 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 ERBB2P04626 1255 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 PDGFRBP09619 1106 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 SSTR3P32745 418 aaPredicted RBP16.04■□□□□ 0.16
SCLT1-209ENST00000511426 ERCC6LQ2NKX8 1250 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 TEX35Q5T0J7 233 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 SEL1L2Q5TEA6 688 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 MCEEQ96PE7 176 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 DUSP16Q9BY84 665 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 UBXN6Q9BZV1 441 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 FAM49BQ9NUQ9 324 aa16.04■□□□□ 0.16
SCLT1-209ENST00000511426 TMEM110-MUSTN1A8MSY1 372 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 PDE2AO00408 941 aaPredicted RBP16.03■□□□□ 0.16
SCLT1-209ENST00000511426 NPR3P17342 541 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 PDE4CQ08493 712 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 ELAVL2Q12926 359 aaKnown RBP16.03■□□□□ 0.16
SCLT1-209ENST00000511426 IKBKEQ14164 716 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 CD300LGQ6UXG3 332 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 POLNQ7Z5Q5 900 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 LRRN4CLQ8ND94 238 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 UBA3Q8TBC4 463 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 MYCBPAPQ8TBZ2 947 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 SLC2A14Q8TDB8 520 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 MAIP1Q8WWC4 291 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 KCTD13Q8WZ19 329 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 ANKRD7Q92527 254 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 RNPC3Q96LT9 517 aaKnown RBP16.03■□□□□ 0.16
SCLT1-209ENST00000511426 OXCT2Q9BYC2 517 aaPredicted RBP16.03■□□□□ 0.16
SCLT1-209ENST00000511426 CHORDC1Q9UHD1 332 aaPredicted RBP16.03■□□□□ 0.16
SCLT1-209ENST00000511426 TMEM59LQ9UK28 342 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 ATP11BQ9Y2G3 1177 aa16.03■□□□□ 0.16
SCLT1-209ENST00000511426 GOLGA6L10A0A0M3HER8 536 aa16.02■□□□□ 0.16
SCLT1-209ENST00000511426 ABHD14A-ACY1A0A1B0GW23 586 aa16.02■□□□□ 0.16
SCLT1-209ENST00000511426 E5RJQ4 531 aa16.02■□□□□ 0.16
SCLT1-209ENST00000511426 HSPA1AP0DMV8 641 aaKnown RBP16.02■□□□□ 0.16
SCLT1-209ENST00000511426 HSPA1BP0DMV9 641 aaKnown RBP16.02■□□□□ 0.16
SCLT1-209ENST00000511426 CETN2P41208 172 aa16.02■□□□□ 0.16
SCLT1-209ENST00000511426 ELF2Q15723 593 aa16.02■□□□□ 0.16
SCLT1-209ENST00000511426 C2CD6Q53TS8 623 aa16.02■□□□□ 0.16
SCLT1-209ENST00000511426 FUKQ8N0W3 1084 aa16.02■□□□□ 0.16
SCLT1-209ENST00000511426 LRRC43Q8N309 656 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms