RNA–Protein interactions for RNA: ENST00000508284.5

SQSTM1-212, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-212ENST00000508284 SPATA6Q9NWH7 488 aaPredicted RBP19.3■□□□□ 0.68
SQSTM1-212ENST00000508284 DDX43Q9NXZ2 648 aaKnown RBP19.3■□□□□ 0.68
SQSTM1-212ENST00000508284 L1RE1Q9UN81 338 aa19.3■□□□□ 0.68
SQSTM1-212ENST00000508284 TSC2P49815 1807 aa19.3■□□□□ 0.68
SQSTM1-212ENST00000508284 PRR23AA6NEV1 266 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 MAN2B1O00754 1011 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 HAPLN1P10915 354 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 ATF6P18850 670 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 CDC25CP30307 473 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 NCAPHQ15003 741 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 NFE2Q16621 373 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 DUOXA2Q1HG44 320 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 GPR158Q5T848 1215 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 GPIHBP1Q8IV16 184 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 ARID3BQ8IVW6 561 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 ACBD6Q9BR61 282 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 AGPAT3Q9NRZ7 376 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 GDAP2Q9NXN4 497 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 DMDP11532 3685 aa19.29■□□□□ 0.68
SQSTM1-212ENST00000508284 CLIC2O15247 247 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 LAMTOR5O43504 91 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 ACAT1P24752 427 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 CCNE1P24864 410 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 TARSP26639 723 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 HOXD13P35453 343 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 MAGEA9P43362 315 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 CYP2J2P51589 502 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 LRRC63Q05C16 580 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 HS2ST1Q7LGA3 356 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 TOP6BLQ8N6T0 577 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 OR5B17Q8NGF7 314 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 CSGALNACT1Q8TDX6 532 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 SCFD1Q8WVM8 642 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 FNBP1Q96RU3 617 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 PI4K2AQ9BTU6 479 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 TMLHEQ9NVH6 421 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 SIX4Q9UIU6 781 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 NDRG2Q9UN36 371 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 MAPK8IP1Q9UQF2 711 aa19.28■□□□□ 0.68
SQSTM1-212ENST00000508284 COL4A3Q01955 1670 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 SP9P0CG40 484 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 DLATP10515 647 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 TNNI1P19237 187 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 LHX1P48742 406 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 CYP4F8P98187 520 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 SNRNP35Q16560 246 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 SCARA3Q6AZY7 606 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 ZC3H14Q6PJT7 736 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 WDR49Q8IV35 697 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 ADGRF2Q8IZF7 708 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 CXorf38Q8TB03 319 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 HPDLQ96IR7 371 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 TASP1Q9H6P5 420 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 TRPV5Q9NQA5 729 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 PIAS3Q9Y6X2 628 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 R4GN57 208 aa19.27■□□□□ 0.68
SQSTM1-212ENST00000508284 MIA3Q5JRA6 1907 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 TGFB1I1O43294 461 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 PCSK1P29120 753 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 SNRPFP62306 86 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 INTS6LQ5JSJ4 861 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 TTI2Q6NXR4 508 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 XXYLT1Q8NBI6 393 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 SPATA18Q8TC71 538 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 FAM3CQ92520 227 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 MED15Q96RN5 788 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 TSG101Q99816 390 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 GTF3C4Q9UKN8 822 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 MAGED2Q9UNF1 606 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 NFE2L3Q9Y4A8 694 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 PTPRZ1P23471 2315 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 VPS13AQ96RL7 3174 aa19.26■□□□□ 0.67
SQSTM1-212ENST00000508284 PTPRJQ12913 1337 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 CHADO15335 359 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 CSH1P0DML2 217 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 CSH2P0DML3 217 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 STX17P56962 302 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 RPL10AP62906 217 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 SOWAHAQ2M3V2 549 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 ZCWPW2Q504Y3 356 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 DPH6Q7L8W6 267 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 OSTM1Q86WC4 334 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 SPATA2LQ8IUW3 424 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 CLDN23Q96B33 292 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 CCDC127Q96BQ5 260 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 RSPRY1Q96DX4 576 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 MMS19Q96T76 1030 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 MKNK1Q9BUB5 465 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 SEMA4AQ9H3S1 761 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 IL21Q9HBE4 155 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 CGNQ9P2M7 1197 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 NCANO14594 1321 aa19.25■□□□□ 0.67
SQSTM1-212ENST00000508284 RIF1Q5UIP0 2472 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-212ENST00000508284 CYP2F1P24903 491 aa19.24■□□□□ 0.67
SQSTM1-212ENST00000508284 RPS9P46781 194 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-212ENST00000508284 GPR15P49685 360 aa19.24■□□□□ 0.67
SQSTM1-212ENST00000508284 KPNA1P52294 538 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-212ENST00000508284 CSTF1Q05048 431 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-212ENST00000508284 FCHO2Q0JRZ9 810 aa19.24■□□□□ 0.67
SQSTM1-212ENST00000508284 DDR2Q16832 855 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms