RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 ATP2C2O75185 946 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 NDUFA10O95299 355 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 LSM8O95777 96 aaKnown RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 C1RP00736 705 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 CALCAP01258 141 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 MMEP08473 750 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 CFHP08603 1231 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 FAM228BP0C875 321 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 UNGP13051 313 aaPredicted RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 TNFAIP3P21580 790 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 ACAT1P24752 427 aaKnown RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 CTNNB1P35222 781 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 CYLC1P35663 651 aaPredicted RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 PBX2P40425 430 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 GLUD2P49448 558 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 KIF11P52732 1056 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 TSPY1Q01534 308 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 CREMQ03060 361 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 DMTNQ08495 405 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 GPR17Q13304 367 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 PSMD5Q16401 504 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 CTXN3Q4LDR2 81 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 C10orf76Q5T2E6 689 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 PPP1R2P3Q6NXS1 205 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 RSPO2Q6UXX9 243 aaPredicted RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 RAD9BQ6WBX8 426 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 TRIM72Q6ZMU5 477 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 LRRTM3Q86VH5 581 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 VPS36Q86VN1 386 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 CEP57Q86XR8 500 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 DCP1BQ8IZD4 617 aaKnown RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 FUKQ8N0W3 1084 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 VPS52Q8N1B4 723 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 ANKRD52Q8NB46 1076 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 FBXO22Q8NEZ5 403 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 OR10T2Q8NGX3 314 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 C2orf15Q8WU43 125 aaKnown RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 CYFIP2Q96F07 1278 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 CCDC42Q96M95 316 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 TMEM209Q96SK2 561 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 PCDHB18PQ96TA0 734 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 CLSTN3Q9BQT9 956 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 C17orf80Q9BSJ5 609 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 C11orf84Q9BUA3 381 aaPredicted RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 B3GNT5Q9BYG0 378 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 UBXN6Q9BZV1 441 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 ISCUQ9H1K1 167 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 RXFP1Q9HBX9 757 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.64□□□□□ -1.19
NUP54-204ENST00000506098 ADAMTS1Q9UHI8 967 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 PUF60Q9UHX1 559 aaKnown RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 GTF3C4Q9UKN8 822 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 EPN1Q9Y6I3 576 aaPredicted RBP7.64□□□□□ -1.19
NUP54-204ENST00000506098 MYOFQ9NZM1 2061 aa7.64□□□□□ -1.19
NUP54-204ENST00000506098 BRWD1Q9NSI6 2320 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 LAMA3Q16787 3333 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 CHD5Q8TDI0 1954 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 ZNF263O14978 683 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 AKR1B10O60218 316 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 RTN2O75298 545 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 MICAL2O94851 1124 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 ABLIM3O94929 683 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 URODP06132 367 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 SETSIPP0DME0 302 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 CD19P15391 556 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 DNAJB1P25685 340 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 GPD2P43304 727 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 RPL34P49207 117 aaKnown RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 PSEN1P49768 467 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 ERVFC1P60507 584 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 PSMC1P62191 440 aaKnown RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 NOMO3P69849 1222 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 CENPCQ03188 943 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 ORC1Q13415 861 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 CAMK1Q14012 370 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 MTF1Q14872 753 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 PTPN14Q15678 1187 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 NFE2Q16621 373 aaPredicted RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 CLEC16AQ2KHT3 1053 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 LRIT3Q3SXY7 679 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 CFAP221Q4G0U5 840 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 MDH1BQ5I0G3 518 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 TPGS2Q68CL5 300 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 ACAD10Q6JQN1 1059 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 PDE12Q6L8Q7 609 aaKnown RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 KIAA1841Q6NSI8 718 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 ALKBH5Q6P6C2 394 aaKnown RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 PRSS55Q6UWB4 352 aaPredicted RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 CHRDL2Q6WN34 429 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 C4orf50Q6ZRC1 276 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 SPRED2Q7Z698 418 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 PALB2Q86YC2 1186 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 GLYCTKQ8IVS8 523 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 WDTC1Q8N5D0 677 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 STK32AQ8WU08 396 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 SLC35F5Q8WV83 523 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 POF1BQ8WVV4 589 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 RIN2Q8WYP3 895 aaPredicted RBP7.63□□□□□ -1.19
NUP54-204ENST00000506098 PCED1BQ96HM7 432 aa7.63□□□□□ -1.19
NUP54-204ENST00000506098 FUBP3Q96I24 572 aaKnown RBP eCLIP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms