RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 SH3TC2Q8TF17 1288 aa12.49□□□□□ -0.41
UBE3D-206ENST00000505226 SKA1Q96BD8 255 aa12.49□□□□□ -0.41
UBE3D-206ENST00000505226 ACSS3Q9H6R3 686 aa12.49□□□□□ -0.41
UBE3D-206ENST00000505226 TAS2R1Q9NYW7 299 aa12.49□□□□□ -0.41
UBE3D-206ENST00000505226 TCEAL9Q9UHQ7 104 aa12.49□□□□□ -0.41
UBE3D-206ENST00000505226 ZBTB12Q9Y330 459 aaPredicted RBP12.49□□□□□ -0.41
UBE3D-206ENST00000505226 RIPK3Q9Y572 518 aa12.49□□□□□ -0.41
UBE3D-206ENST00000505226 ARID2Q68CP9 1835 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 DLDP09622 509 aaKnown RBP12.48□□□□□ -0.41
UBE3D-206ENST00000505226 BRD2P25440 801 aaKnown RBP12.48□□□□□ -0.41
UBE3D-206ENST00000505226 ETV4P43268 484 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 OTUD4Q01804 1114 aaKnown RBP12.48□□□□□ -0.41
UBE3D-206ENST00000505226 HSF5Q4G112 596 aaPredicted RBP12.48□□□□□ -0.41
UBE3D-206ENST00000505226 SYCP2LQ5T4T6 812 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 SNX30Q5VWJ9 437 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 FYB2Q5VWT5 728 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 SH2D5Q6ZV89 423 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 CCDC60Q8IWA6 550 aaPredicted RBP12.48□□□□□ -0.41
UBE3D-206ENST00000505226 UNC45BQ8IWX7 931 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 ZNF398Q8TD17 642 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 DTX3LQ8TDB6 740 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 C17orf75Q9HAS0 396 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 SLC38A10Q9HBR0 1119 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 ARHGEF4Q9NR80 690 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 CNTNAP2Q9UHC6 1331 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 TTLL13PA6NNM8 815 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 NVLO15381 856 aaKnown RBP12.48□□□□□ -0.41
UBE3D-206ENST00000505226 RXRBP28702 533 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 MCL1Q07820 350 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 ZC3H12AQ5D1E8 599 aaKnown RBP12.48□□□□□ -0.41
UBE3D-206ENST00000505226 LRRC38Q5VT99 294 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 UBR7Q8N806 425 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 TMEM143Q96AN5 459 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 TMEM120AQ9BXJ8 343 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 VPS11Q9H270 941 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 RBAKQ9NYW8 714 aaPredicted RBP12.48□□□□□ -0.41
UBE3D-206ENST00000505226 ARMCX1Q9P291 453 aa12.48□□□□□ -0.41
UBE3D-206ENST00000505226 SEPT9Q9UHD8 586 aaPredicted RBP12.48□□□□□ -0.41
UBE3D-206ENST00000505226 ONECUT3O60422 494 aaPredicted RBP12.47□□□□□ -0.41
UBE3D-206ENST00000505226 CCDC22O60826 627 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 DHRS4L1P0CG22 281 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 RFC5P40937 340 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 ENPEPQ07075 957 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 MUM1Q2TAK8 710 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 RNF220Q5VTB9 566 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 CES4AQ5XG92 561 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 RFX8Q6ZV50 586 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 KBTBD2Q8IY47 623 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 FBXO41Q8TF61 875 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 SCG3Q8WXD2 468 aaKnown RBP12.47□□□□□ -0.41
UBE3D-206ENST00000505226 TFAP2BQ92481 460 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 TSSK1BQ9BXA7 367 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 CYP26B1Q9NR63 512 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 STYXL1Q9Y6J8 313 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 E7ESA3 106 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 HAUS5O94927 633 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 TROVE2P10155 538 aaKnown RBP eCLIP12.47□□□□□ -0.41
UBE3D-206ENST00000505226 BGNP21810 368 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 SP100P23497 879 aaPredicted RBP12.47□□□□□ -0.41
UBE3D-206ENST00000505226 PTPN7P35236 360 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 CETN2P41208 172 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 PRKD1Q15139 912 aaPredicted RBP12.47□□□□□ -0.41
UBE3D-206ENST00000505226 GNPTABQ3T906 1256 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 FOXB2Q5VYV0 432 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 OR52E8Q6IFG1 317 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 CDHR3Q6ZTQ4 885 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 PPIL6Q8IXY8 311 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 NSL1Q96IY1 281 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 ZWILCHQ9H900 591 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 TMOD2Q9NZR1 351 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 PGAP2Q9UHJ9 254 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 RPL26L1Q9UNX3 145 aaKnown RBP12.47□□□□□ -0.41
UBE3D-206ENST00000505226 ASB3Q9Y575 518 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 CAPN9O14815 690 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 ATP2A1O14983 1001 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 RAD17O75943 681 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 KCNA2P16389 499 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 RFC1P35251 1148 aaPredicted RBP12.47□□□□□ -0.41
UBE3D-206ENST00000505226 MRPS35P82673 323 aaKnown RBP12.47□□□□□ -0.41
UBE3D-206ENST00000505226 KLC1Q07866 573 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 TAF5Q15542 800 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 BBS9Q3SYG4 887 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 ARHGEF16Q5VV41 709 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 DNAJC24Q6P3W2 148 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 DCUN1D2Q6PH85 259 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 LMNTD2Q8IXW0 634 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 ATP11CQ8NB49 1132 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 FAM111AQ96PZ2 611 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 TARS2Q9BW92 718 aaKnown RBP12.47□□□□□ -0.41
UBE3D-206ENST00000505226 DLGAP2Q9P1A6 1054 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 WASF2Q9Y6W5 498 aa12.47□□□□□ -0.41
UBE3D-206ENST00000505226 KIAA1217Q5T5P2 1943 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 FAM237BA0A1B0GVD1 139 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 TM9SF1O15321 606 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 GYG2O15488 501 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 CST8O60676 142 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 DGAT1O75907 488 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 FAM155BO75949 473 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 VHLP40337 213 aa12.46□□□□□ -0.41
UBE3D-206ENST00000505226 CPA2P48052 419 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms