RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 SPATA6Q9NWH7 488 aaPredicted RBP19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 DDX43Q9NXZ2 648 aaKnown RBP19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 L1RE1Q9UN81 338 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 TSC2P49815 1807 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 PRR23AA6NEV1 266 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 MAN2B1O00754 1011 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 HAPLN1P10915 354 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 ATF6P18850 670 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 CDC25CP30307 473 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 NCAPHQ15003 741 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 NFE2Q16621 373 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 DUOXA2Q1HG44 320 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 GPR158Q5T848 1215 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 GPIHBP1Q8IV16 184 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 ARID3BQ8IVW6 561 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 ACBD6Q9BR61 282 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 AGPAT3Q9NRZ7 376 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 GDAP2Q9NXN4 497 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 DMDP11532 3685 aa19.29■□□□□ 0.68
SQSTM1-209ENST00000504627 CLIC2O15247 247 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 LAMTOR5O43504 91 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 ACAT1P24752 427 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 CCNE1P24864 410 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 TARSP26639 723 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 HOXD13P35453 343 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 MAGEA9P43362 315 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 CYP2J2P51589 502 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 LRRC63Q05C16 580 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 HS2ST1Q7LGA3 356 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 TOP6BLQ8N6T0 577 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 OR5B17Q8NGF7 314 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 CSGALNACT1Q8TDX6 532 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 SCFD1Q8WVM8 642 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 FNBP1Q96RU3 617 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 PI4K2AQ9BTU6 479 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 TMLHEQ9NVH6 421 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 SIX4Q9UIU6 781 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 NDRG2Q9UN36 371 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 MAPK8IP1Q9UQF2 711 aa19.28■□□□□ 0.68
SQSTM1-209ENST00000504627 COL4A3Q01955 1670 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 SP9P0CG40 484 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 DLATP10515 647 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 TNNI1P19237 187 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 LHX1P48742 406 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 CYP4F8P98187 520 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 SNRNP35Q16560 246 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 SCARA3Q6AZY7 606 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 ZC3H14Q6PJT7 736 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 WDR49Q8IV35 697 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 ADGRF2Q8IZF7 708 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 CXorf38Q8TB03 319 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 HPDLQ96IR7 371 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 TASP1Q9H6P5 420 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 TRPV5Q9NQA5 729 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 PIAS3Q9Y6X2 628 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 R4GN57 208 aa19.27■□□□□ 0.68
SQSTM1-209ENST00000504627 MIA3Q5JRA6 1907 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 TGFB1I1O43294 461 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 PCSK1P29120 753 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 SNRPFP62306 86 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 INTS6LQ5JSJ4 861 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 TTI2Q6NXR4 508 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 XXYLT1Q8NBI6 393 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 SPATA18Q8TC71 538 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 FAM3CQ92520 227 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 MED15Q96RN5 788 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 TSG101Q99816 390 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 GTF3C4Q9UKN8 822 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 MAGED2Q9UNF1 606 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 NFE2L3Q9Y4A8 694 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 PTPRZ1P23471 2315 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 VPS13AQ96RL7 3174 aa19.26■□□□□ 0.67
SQSTM1-209ENST00000504627 PTPRJQ12913 1337 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 CHADO15335 359 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 CSH1P0DML2 217 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 CSH2P0DML3 217 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 STX17P56962 302 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 RPL10AP62906 217 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 SOWAHAQ2M3V2 549 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 ZCWPW2Q504Y3 356 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 DPH6Q7L8W6 267 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 OSTM1Q86WC4 334 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 SPATA2LQ8IUW3 424 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 CLDN23Q96B33 292 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 CCDC127Q96BQ5 260 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 RSPRY1Q96DX4 576 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 MMS19Q96T76 1030 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 MKNK1Q9BUB5 465 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 SEMA4AQ9H3S1 761 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 IL21Q9HBE4 155 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 CGNQ9P2M7 1197 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 NCANO14594 1321 aa19.25■□□□□ 0.67
SQSTM1-209ENST00000504627 RIF1Q5UIP0 2472 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 CYP2F1P24903 491 aa19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 RPS9P46781 194 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 GPR15P49685 360 aa19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 KPNA1P52294 538 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 CSTF1Q05048 431 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 FCHO2Q0JRZ9 810 aa19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 DDR2Q16832 855 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms