RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 EBLN1P0CF75 366 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 PPIFP30405 207 aaKnown RBP7.07□□□□□ -1.28
SF3B1-212ENST00000496458 SP2Q02086 613 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 CTBP1Q13363 440 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 BMPR2Q13873 1038 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 CNN3Q15417 329 aaKnown RBP7.07□□□□□ -1.28
SF3B1-212ENST00000496458 TEDDM1Q5T9Z0 273 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 NTN5Q8WTR8 489 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-212ENST00000496458 NELL1Q92832 810 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 HAPLN3Q96S86 360 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 C22orf23Q9BZE7 217 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 FAM204AQ9H8W3 233 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 SSX2IPQ9Y2D8 614 aa7.07□□□□□ -1.28
SF3B1-212ENST00000496458 A0A087WWL8 130 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 CFAP69A5D8W1 941 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 LRRC3CA6NJW4 275 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 VSTM5A8MXK1 200 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 hCG_1984214I3L0E3 225 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 PPM1GO15355 546 aaPredicted RBP7.06□□□□□ -1.28
SF3B1-212ENST00000496458 MARCH6O60337 910 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 NXPH3O95157 252 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 PCSK6P29122 969 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 CLCN2P51788 898 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 SATB1Q01826 763 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 SLC13A2Q13183 592 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 FAM153CQ494X1 144 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 PLAC9Q5JTB6 97 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 ZNF618Q5T7W0 954 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 MAVSQ7Z434 540 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 AMIGO2Q86SJ2 522 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 ZNF280BQ86YH2 543 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 RASAL3Q86YV0 1011 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 MPP5Q8N3R9 675 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 ZNF384Q8TF68 577 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 TIMP4Q99727 224 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 ARPP21Q9UBL0 812 aaPredicted RBP7.06□□□□□ -1.28
SF3B1-212ENST00000496458 NDRG4Q9ULP0 352 aaKnown RBP7.06□□□□□ -1.28
SF3B1-212ENST00000496458 L1RE1Q9UN81 338 aa7.06□□□□□ -1.28
SF3B1-212ENST00000496458 MRPS17Q9Y2R5 130 aaKnown RBP7.06□□□□□ -1.28
SF3B1-212ENST00000496458 COL11A2P13942 1736 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-212ENST00000496458 GCOM1H8Y6P7 765 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-212ENST00000496458 TBX3O15119 743 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 TBC1D4O60343 1298 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 C1RP00736 705 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 CYP2C9P11712 490 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 EN2P19622 333 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-212ENST00000496458 GPD1P21695 349 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 WNT3P56703 355 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 KRT17Q04695 432 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 E2F2Q14209 437 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 APOA5Q6Q788 366 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 ZNF551Q7Z340 670 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-212ENST00000496458 DTX2Q86UW9 622 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 ATG4AQ8WYN0 398 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 SARAFQ96BY9 339 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 PUS7Q96PZ0 661 aaKnown RBP7.05□□□□□ -1.28
SF3B1-212ENST00000496458 DPH1Q9BZG8 443 aa7.05□□□□□ -1.28
SF3B1-212ENST00000496458 MS4A7Q9GZW8 240 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-212ENST00000496458 USP19O94966 1318 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 GOLGA6CA6NDK9 693 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 GOLGA6BA6NDN3 693 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 TMEM233B4DJY2 109 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 MASP2O00187 686 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 SLC16A3O15427 465 aaKnown RBP7.04□□□□□ -1.28
SF3B1-212ENST00000496458 TLR5O60602 858 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 GOLGA6DP0CG33 693 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 XRCC6P12956 609 aaKnown RBP eCLIP7.04□□□□□ -1.28
SF3B1-212ENST00000496458 WT1P19544 449 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-212ENST00000496458 LRPAP1P30533 357 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 MYO1EQ12965 1108 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 RAB32Q13637 225 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 ZIK1Q3SY52 487 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-212ENST00000496458 TREML2Q5T2D2 321 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 SYCE2Q6PIF2 218 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 RAPGEF4Q8WZA2 1011 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 ANKS1AQ92625 1134 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 MESP1Q9BRJ9 268 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 SMURF2Q9HAU4 748 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 ARHGEF3Q9NR81 526 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 GOLGA6AQ9NYA3 693 aa7.04□□□□□ -1.28
SF3B1-212ENST00000496458 MYO1FO00160 1098 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 ERBB2P04626 1255 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 JUPP14923 745 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 BRAFP15056 766 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 NDUFB7P17568 137 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 DRD4P21917 467 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 FBLP22087 321 aaKnown RBP7.03□□□□□ -1.28
SF3B1-212ENST00000496458 ITPKBP27987 946 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 CD38P28907 300 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 LIPAP38571 399 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 CCT8P50990 548 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 GRM3Q14832 879 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 GFOD2Q3B7J2 385 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 MGAT5BQ3V5L5 792 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 PPP4R4Q6NUP7 873 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 CCDC149Q6ZUS6 474 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 C14orf80Q86SX3 495 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 WDR75Q8IWA0 830 aaKnown RBP7.03□□□□□ -1.28
SF3B1-212ENST00000496458 MAML1Q92585 1016 aa7.03□□□□□ -1.28
SF3B1-212ENST00000496458 CXorf36Q9H7Y0 433 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms