RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 GTF3C4Q9UKN8 822 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 MTMR6Q9Y217 621 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 SNX9Q9Y5X1 595 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 TADA3O75528 432 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 NOL4O94818 638 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 TRIM68Q6AZZ1 485 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.71■■□□□ 1.39
HDDC3-203ENST00000494993 WDR5BQ86VZ2 330 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 CCDC65Q8IXS2 484 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 ADGRF2Q8IZF7 708 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 GPD1LQ8N335 351 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 TOP6BLQ8N6T0 577 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 RIN3Q8TB24 985 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 TRMT2BQ96GJ1 504 aaKnown RBP23.71■■□□□ 1.39
HDDC3-203ENST00000494993 RTKNQ9BST9 563 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 EBF3Q9H4W6 596 aa23.71■■□□□ 1.39
HDDC3-203ENST00000494993 OTOL1A6NHN0 477 aaPredicted RBP23.7■■□□□ 1.38
HDDC3-203ENST00000494993 HOXC13P31276 330 aa23.7■■□□□ 1.38
HDDC3-203ENST00000494993 LHX1P48742 406 aa23.7■■□□□ 1.38
HDDC3-203ENST00000494993 ZNF268Q14587 947 aaPredicted RBP23.7■■□□□ 1.38
HDDC3-203ENST00000494993 TMEM196Q5HYL7 178 aa23.7■■□□□ 1.38
HDDC3-203ENST00000494993 PDILTQ8N807 584 aa23.7■■□□□ 1.38
HDDC3-203ENST00000494993 CHFRQ96EP1 664 aa23.7■■□□□ 1.38
HDDC3-203ENST00000494993 INTS4Q96HW7 963 aaKnown RBP23.7■■□□□ 1.38
HDDC3-203ENST00000494993 ANKRD36BP1Q96IX9 119 aa23.7■■□□□ 1.38
HDDC3-203ENST00000494993 ZSCAN16Q9H4T2 348 aaPredicted RBP23.7■■□□□ 1.38
HDDC3-203ENST00000494993 DYNC1LI1Q9Y6G9 523 aaKnown RBP23.7■■□□□ 1.38
HDDC3-203ENST00000494993 GABRDO14764 452 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 KIAA0391O15091 583 aaKnown RBP23.69■■□□□ 1.38
HDDC3-203ENST00000494993 HCRTO43612 131 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 PCSK1P29120 753 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 GRSF1Q12849 480 aaKnown RBP eCLIP23.69■■□□□ 1.38
HDDC3-203ENST00000494993 CCDC142Q17RM4 750 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 SOWAHAQ2M3V2 549 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 CFAP221Q4G0U5 840 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 LMBRD2Q68DH5 695 aaPredicted RBP23.69■■□□□ 1.38
HDDC3-203ENST00000494993 FSTL4Q6MZW2 842 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 CC2D1AQ6P1N0 951 aaPredicted RBP23.69■■□□□ 1.38
HDDC3-203ENST00000494993 PKN3Q6P5Z2 889 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 FUBP3Q96I24 572 aaKnown RBP eCLIP23.69■■□□□ 1.38
HDDC3-203ENST00000494993 MYRFLQ96LU7 910 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 SEMA4GQ9NTN9 838 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 INTS13Q9NVM9 706 aa23.69■■□□□ 1.38
HDDC3-203ENST00000494993 PTPRJQ12913 1337 aa23.68■■□□□ 1.38
HDDC3-203ENST00000494993 TRDMT1O14717 391 aaKnown RBP23.68■■□□□ 1.38
HDDC3-203ENST00000494993 ARSAP15289 507 aa23.68■■□□□ 1.38
HDDC3-203ENST00000494993 NASPP49321 788 aaPredicted RBP23.68■■□□□ 1.38
HDDC3-203ENST00000494993 STXBP4Q6ZWJ1 553 aa23.68■■□□□ 1.38
HDDC3-203ENST00000494993 CEP68Q76N32 757 aa23.68■■□□□ 1.38
HDDC3-203ENST00000494993 SPATA2LQ8IUW3 424 aaPredicted RBP23.68■■□□□ 1.38
HDDC3-203ENST00000494993 TNMDQ9H2S6 317 aa23.68■■□□□ 1.38
HDDC3-203ENST00000494993 R3HCC1Q9Y3T6 440 aaKnown RBP23.68■■□□□ 1.38
HDDC3-203ENST00000494993 AMPD2Q01433 879 aa23.67■■□□□ 1.38
HDDC3-203ENST00000494993 FAM160A1Q05DH4 1040 aa23.67■■□□□ 1.38
HDDC3-203ENST00000494993 MYO1EQ12965 1108 aa23.67■■□□□ 1.38
HDDC3-203ENST00000494993 PDGFRLQ15198 375 aa23.67■■□□□ 1.38
HDDC3-203ENST00000494993 CSRP2Q16527 193 aa23.67■■□□□ 1.38
HDDC3-203ENST00000494993 DPH6Q7L8W6 267 aa23.67■■□□□ 1.38
HDDC3-203ENST00000494993 FAM160A2Q8N612 972 aaPredicted RBP23.67■■□□□ 1.38
HDDC3-203ENST00000494993 GLIS3Q8NEA6 775 aa23.67■■□□□ 1.38
HDDC3-203ENST00000494993 OR5B17Q8NGF7 314 aa23.67■■□□□ 1.38
HDDC3-203ENST00000494993 NETO1Q8TDF5 533 aa23.67■■□□□ 1.38
HDDC3-203ENST00000494993 DCDC2BA2VCK2 349 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 ZNF233A6NK53 670 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 STX6O43752 255 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 TNNC2P02585 160 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 MTF1Q14872 753 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 STK38Q15208 465 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 SURF1Q15526 300 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 FAM171BQ6P995 826 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 PRR23CQ6ZRP0 262 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 LIMS2Q7Z4I7 341 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 CBWD2Q8IUF1 395 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 SCN4BQ8IWT1 228 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 LINC00301Q8NCQ3 95 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 HPS3Q969F9 1004 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 HPDLQ96IR7 371 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 LRRC27Q9C0I9 530 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 TRPC7Q9HCX4 862 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 FOXD4L1Q9NU39 408 aa23.66■■□□□ 1.38
HDDC3-203ENST00000494993 TPRP12270 2363 aaKnown RBP23.65■■□□□ 1.38
HDDC3-203ENST00000494993 TRAV19A0A0A6YYK7 116 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 ATG13O75143 517 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 EGFP01133 1207 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 USP17L7P0C7H9 530 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 MAGEA11P43364 429 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 USP4Q13107 963 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 ZNF77Q15935 545 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 E2F4Q16254 413 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 DUOXA2Q1HG44 320 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 C4orf50Q6ZRC1 276 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 KBTBD7Q8WVZ9 684 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 SLC22A12Q96S37 553 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 CYP2S1Q96SQ9 504 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 SYT15Q9BQS2 421 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 FBRSL1Q9HCM7 1045 aaKnown RBP23.65■■□□□ 1.38
HDDC3-203ENST00000494993 KBTBD4Q9NVX7 518 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 HSPBP1Q9NZL4 362 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 CDH9Q9ULB4 789 aa23.65■■□□□ 1.38
HDDC3-203ENST00000494993 CCDC163A0A0D9SF12 145 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms