RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ASPAP45381 313 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 CCNG2Q16589 344 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 ZBTB8OSQ8IWT0 167 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 EXD1Q8NHP7 514 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 LRRN4Q8WUT4 740 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 RSRC1Q96IZ7 334 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 TMEM121Q9BTD3 319 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 RNPEPQ9H4A4 650 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 IP6K2Q9UHH9 426 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 KCNG1Q9UIX4 513 aa17.4■□□□□ 0.38
CCDC88B-210ENST00000494566 ABCD1P33897 745 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 ENPEPQ07075 957 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 WDR72Q3MJ13 1102 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 ATF7IP2Q5U623 682 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 IER5Q5VY09 327 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 EFCAB12Q6NXP0 572 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 CKAP2Q8WWK9 683 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 ARL2BPQ9Y2Y0 163 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 NFICP08651 508 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 RPA3P35244 121 aaPredicted RBP17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 RFC1P35251 1148 aaPredicted RBP17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 SMAD1Q15797 465 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 PTPN20Q4JDL3 420 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 SULF1Q8IWU6 871 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 MAIP1Q8WWC4 291 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 CPB2Q96IY4 423 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 TWNKQ96RR1 684 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 XYLT2Q9H1B5 865 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 C15orf41Q9Y2V0 281 aa17.39■□□□□ 0.37
CCDC88B-210ENST00000494566 TAC1P20366 129 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 LACTBP83111 547 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 GPS1Q13098 491 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 CELF3Q5SZQ8 465 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 RPAINQ86UA6 219 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 ZBED8Q8IZ13 594 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 SGIP1Q9BQI5 828 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 RBPJLQ9UBG7 517 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 LIASO43766 372 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 CA4P22748 312 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 KLRC2P26717 231 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 MAGEA4P43358 317 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 ARSEP51690 589 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 EFNA5P52803 228 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 EAPPQ56P03 285 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 TMEM35BQ8NCS4 154 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 SPDL1Q96EA4 605 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 VCPIP1Q96JH7 1222 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 SDCBP2Q9H190 292 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 SMYD3Q9H7B4 428 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 PCSK1NQ9UHG2 260 aa17.38■□□□□ 0.37
CCDC88B-210ENST00000494566 CD48P09326 243 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 TXNP10599 105 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 MCL1Q07820 350 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 SGSM1Q2NKQ1 1148 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 SPOCD1Q6ZMY3 1216 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 KIAA0319LQ8IZA0 1049 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 TTC8Q8TAM2 541 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 DCPSQ96C86 337 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 NPHS2Q9NP85 383 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 OTOFQ9HC10 1997 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 LOC285556D6RIA3 1793 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 TCRBV5S1A1TA0A578 114 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 GPR25O00155 361 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 IL1R2P27930 398 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 EPHB2P29323 1055 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 BNIP1Q12981 228 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 TAF5Q15542 800 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 TNFAIP8L3Q5GJ75 292 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 CDCA2Q69YH5 1023 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 TLDC1Q6P9B6 456 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 MPZL3Q6UWV2 235 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 CCDC89Q8N998 374 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 SERPINB12Q96P63 405 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 CDT1Q9H211 546 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 RNF19AQ9NV58 838 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 ENO4A6NNW6 628 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 SLC1A5Q15758 541 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 RAB6CQ53S08 254 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 UTP4Q969X6 686 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 TMEM109Q9BVC6 243 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 RAB6CQ9H0N0 254 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 SIX4Q9UIU6 781 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 PHTF1Q9UMS5 762 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 PPP2R3BQ9Y5P8 575 aa17.37■□□□□ 0.37
CCDC88B-210ENST00000494566 VTNP04004 478 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 ITGB3P05106 788 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 FGFR1P11362 822 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 PECAM1P16284 738 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 PSMA2P25787 234 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 MAN1A1P33908 653 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 NAIF1Q69YI7 327 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 ARFGAP1Q8N6T3 406 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 CPXM1Q96SM3 734 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 DONSONQ9NYP3 566 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 A0A1B0GUA9 196 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 ENTPD5O75356 428 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 MAP3K6O95382 1288 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 OAS1P00973 400 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 TNNC2P02585 160 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 CALB1P05937 261 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms