RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 PDGFRBP09619 1106 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 ATF6P18850 670 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 LMO2P25791 158 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 GABRR2P28476 465 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 TUFMP49411 452 aaKnown RBP11.44□□□□□ -0.58
COL6A3-214ENST00000493608 CASP4P49662 377 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 MRE11P49959 708 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 TSPY1Q01534 308 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 GUCA2AQ02747 115 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 MYO1EQ12965 1108 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 BECN1Q14457 450 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 PSMD6Q15008 389 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 TAF12Q16514 161 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 BMT2Q1RMZ1 405 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 PKDCCQ504Y2 493 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 VITQ6UXI7 678 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 GAREM2Q75VX8 874 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 TRAPPC11Q7Z392 1133 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 WDR49Q8IV35 697 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 ADGRF2Q8IZF7 708 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 ZSCAN18Q8TBC5 510 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-214ENST00000493608 SPPL2BQ8TCT7 592 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 PLEKHO2Q8TD55 490 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 SMARCD2Q92925 531 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 PSMG2Q969U7 264 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 ELSPBP1Q96BH3 223 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 ELMO3Q96BJ8 720 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 CGRRF1Q99675 332 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 SCAND2PQ9GZW5 306 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-214ENST00000493608 GZF1Q9H116 711 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-214ENST00000493608 ATXN3LQ9H3M9 355 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 HEBP1Q9NRV9 189 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 GDAP2Q9NXN4 497 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 USP25Q9UHP3 1055 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 MAPK8IP1Q9UQF2 711 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 MTF2Q9Y483 593 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-214ENST00000493608 PCDHB5Q9Y5E4 795 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 ATP6V1DQ9Y5K8 247 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 CACNA1IQ9P0X4 2223 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 TICRRQ7Z2Z1 1910 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 NCANO14594 1321 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 MYBPHLA2RUH7 354 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 ZNF202O95125 648 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 HAPLN1P10915 354 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-214ENST00000493608 GLULP15104 373 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 CYP2F1P24903 491 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 STARD6P59095 220 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 CYP4F8P98187 520 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 MYL7Q01449 175 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 PSMD2Q13200 908 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 VEPH1Q14D04 833 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 MLF2Q15773 248 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-214ENST00000493608 DDR2Q16832 855 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 PHLDB3Q6NSJ2 640 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 ITIH5Q86UX2 942 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 TMEM86AQ8N2M4 240 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 TOP6BLQ8N6T0 577 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 DTWD2Q8NBA8 298 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 LEMD2Q8NC56 503 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 RSPRY1Q96DX4 576 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 MMS19Q96T76 1030 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 ACBD6Q9BR61 282 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 TRMT61BQ9BVS5 477 aaKnown RBP11.43□□□□□ -0.58
COL6A3-214ENST00000493608 MAGED2Q9UNF1 606 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-214ENST00000493608 SIT1Q9Y3P8 196 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 ASB3Q9Y575 518 aa11.43□□□□□ -0.58
COL6A3-214ENST00000493608 F5P12259 2224 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 FAM237AA0A1B0GTK4 181 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 A0A1W2PQ27 194 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 A0A1W2PQ64 194 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 A0A1W2PQD8 194 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 HEPACAM2A8MVW5 462 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 GABRDO14764 452 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 PHACTR2O75167 634 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 GDI1P31150 447 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 LHX1P48742 406 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 MYL6P60660 151 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 PSMC1P62191 440 aaKnown RBP11.42□□□□□ -0.58
COL6A3-214ENST00000493608 SNRPFP62306 86 aaKnown RBP11.42□□□□□ -0.58
COL6A3-214ENST00000493608 PFKPQ01813 784 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 SMARCB1Q12824 385 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 DPYDQ12882 1025 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 FOXC1Q12948 553 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 UBXN2BQ14CS0 331 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 INTS6LQ5JSJ4 861 aaKnown RBP11.42□□□□□ -0.58
COL6A3-214ENST00000493608 GPR158Q5T848 1215 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 KRBA2Q6ZNG9 492 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 TPRG1Q6ZUI0 275 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 ARID3BQ8IVW6 561 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-214ENST00000493608 C12orf56Q8IXR9 622 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 CCDC105Q8IYK2 499 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 C2orf15Q8WU43 125 aaKnown RBP11.42□□□□□ -0.58
COL6A3-214ENST00000493608 KBTBD7Q8WVZ9 684 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 SHDQ96IW2 340 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 LRRC3BQ96PB8 259 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 PKMYT1Q99640 499 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 MKNK1Q9BUB5 465 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 SMG9Q9H0W8 520 aaKnown RBP11.42□□□□□ -0.58
COL6A3-214ENST00000493608 KCTD10Q9H3F6 313 aa11.42□□□□□ -0.58
COL6A3-214ENST00000493608 BRD9Q9H8M2 597 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms