RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PRAMEF12O95522 483 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 PFKLP17858 780 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 FAM160A1Q05DH4 1040 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 CFAP221Q4G0U5 840 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 AASDHQ4L235 1098 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-213ENST00000493475 PRR23CQ6ZRP0 262 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 C11orf74Q86VG3 221 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 GPIHBP1Q8IV16 184 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 EFCAB13Q8IY85 973 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 ADGRF2Q8IZF7 708 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 GPD1LQ8N335 351 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 PDCL2Q8N4E4 241 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 SAAL1Q96ER3 474 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 MKNK1Q9BUB5 465 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 CUEDC2Q9H467 287 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 IL21Q9HBE4 155 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 TRPC7Q9HCX4 862 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 GDAP2Q9NXN4 497 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 TBC1D7Q9P0N9 293 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 FBXO2Q9UK22 296 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-213ENST00000493475 CLIC4Q9Y696 253 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 COL4A3Q01955 1670 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 MYMKA6NI61 221 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 TISP43B9A030 160 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 NRG2O14511 850 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 TRDMT1O14717 391 aaKnown RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 SLC30A4O14863 429 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 PRPF6O94906 941 aaKnown RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 PDIA4P13667 645 aaKnown RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 TRIM21P19474 475 aaKnown RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 ADSSP30520 456 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 PPP3CCP48454 512 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 CEBPZQ03701 1054 aaKnown RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 GRIN1Q05586 938 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 TNK2Q07912 1038 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 MTF1Q14872 753 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 ELF2Q15723 593 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 DUOXA2Q1HG44 320 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 TXNDC11Q6PKC3 985 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 VSTM1Q6UX27 236 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 CRELD2Q6UXH1 353 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 Q6ZS52 159 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 SCN4BQ8IWT1 228 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 C1orf127Q8N9H9 656 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 TTC16Q8NEE8 873 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 INTS4Q96HW7 963 aaKnown RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 MYRFLQ96LU7 910 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 ZNF396Q96N95 335 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 FNBP1Q96RU3 617 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 P2RY13Q9BPV8 354 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 TNMDQ9H2S6 317 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 EBF3Q9H4W6 596 aa12.41□□□□□ -0.42
COL6A3-213ENST00000493475 DUS2Q9NX74 493 aaKnown RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 MAGEC2Q9UBF1 373 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 MORC2Q9Y6X9 1032 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-213ENST00000493475 NCANO14594 1321 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 K7ESF4 209 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 TRIM66O15016 1216 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 HRO43593 1189 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 NOL4O94818 638 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 RHOBTB1O94844 696 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 CLSTN1O94985 981 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 CD2BP2O95400 341 aaKnown RBP12.4□□□□□ -0.42
COL6A3-213ENST00000493475 NFATC1O95644 943 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 F11P03951 625 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 MAGEA11P43364 429 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 CUL4AQ13619 759 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 STK38Q15208 465 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 TMEM196Q5HYL7 178 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 TXNDC8Q6A555 127 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 HS2ST1Q7LGA3 356 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 LRRTM3Q86VH5 581 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 OSCP1Q8WVF1 389 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 GAB3Q8WWW8 586 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 USP13Q92995 863 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-213ENST00000493475 HPDLQ96IR7 371 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 MMS19Q96T76 1030 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 FAM83CQ9BQN1 747 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 STRA6Q9BX79 667 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 MTMR12Q9C0I1 747 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 SMG9Q9H0W8 520 aaKnown RBP12.4□□□□□ -0.42
COL6A3-213ENST00000493475 GTF3C4Q9UKN8 822 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 CDH9Q9ULB4 789 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 L1RE1Q9UN81 338 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 PCDHGA5Q9Y5G8 931 aa12.4□□□□□ -0.42
COL6A3-213ENST00000493475 SLC9A3R1O14745 358 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-213ENST00000493475 HMGA1P17096 107 aaKnown RBP12.39□□□□□ -0.43
COL6A3-213ENST00000493475 CYP2F1P24903 491 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 GRIK1P39086 918 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 SNRPFP62306 86 aaKnown RBP12.39□□□□□ -0.43
COL6A3-213ENST00000493475 PSMD2Q13200 908 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 GAS6Q14393 721 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 SLC39A14Q15043 492 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 DDR2Q16832 855 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 WDR49Q8IV35 697 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 TMEM130Q8N3G9 435 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 FAM160A2Q8N612 972 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-213ENST00000493475 KIAA1958Q8N8K9 716 aa12.39□□□□□ -0.43
COL6A3-213ENST00000493475 IQUBQ8NA54 791 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms