RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	SMIM10L2A	P0DMW4	78 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	SMIM10L2B	P0DMW5	78 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	CASR	P41180	1078 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	CD97	P48960	835 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	SARS	P49591	514 aa	Known RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	ZNF445	P59923	1031 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	PPP2R2A	P63151	447 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	RNASEL	Q05823	741 aa	Known RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	GFPT1	Q06210	699 aa	Predicted RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	TARDBP	Q13148	414 aa	Known RBP eCLIP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	CDK5R2	Q13319	367 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	AUH	Q13825	339 aa	Known RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	ESPL1	Q14674	2120 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	KARS	Q15046	597 aa	Known RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	C21orf62-AS1	Q17RA5	79 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	LY6K	Q17RY6	165 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	MUM1L1	Q5H9M0	696 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	DGKK	Q5KSL6	1271 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	UBXN11	Q5T124	520 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	SPTY2D1	Q68D10	685 aa	Predicted RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	ATF7IP	Q6VMQ6	1270 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	FILIP1	Q7Z7B0	1213 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	VSIG10L	Q86VR7	867 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	ZNF227	Q86WZ6	799 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	MCEMP1	Q8IX19	187 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	FAM20C	Q8IXL6	584 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	ARHGEF39	Q8N4T4	335 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	BEND7	Q8N7W2	519 aa	Predicted RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	ZSWIM2	Q8NEG5	633 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	KLHDC4	Q8TBB5	520 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	BCL7C	Q8WUZ0	217 aa	Predicted RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	OSBP2	Q969R2	916 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	MYRFL	Q96LU7	910 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606		Q96M66	194 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	CASD1	Q96PB1	797 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	PLEKHF1	Q96S99	279 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	MIPEP	Q99797	713 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	KATNAL1	Q9BW62	490 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	BRD9	Q9H8M2	597 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	GP6	Q9HCN6	339 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	ZNF334	Q9HCZ1	680 aa	Predicted RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	CHST12	Q9NRB3	414 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	PILRB	Q9UKJ0	227 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	PTPRD	P23468	1912 aa		4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	BAZ2B	Q9UIF8	2168 aa	Known RBP	4.65	□□□□□ -1.67
UBR4-215	ENST00000492606	HYDIN	Q4G0P3	5121 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	CEP192	Q8TEP8	1941 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	N4BP3	O15049	544 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	PPFIA2	O75334	1257 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	RECQL4	O94761	1208 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	GH1	P01241	217 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	JUP	P14923	745 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	GLB1	P16278	677 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	RAB6A	P20340	208 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	METAP2	P50579	478 aa	Known RBP eCLIP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	NRG1	Q02297	640 aa	Predicted RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	GIT2	Q14161	759 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	GRM4	Q14833	912 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	TCEA2	Q15560	299 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	SF1	Q15637	639 aa	Known RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	SKOR2	Q2VWA4	1001 aa	Predicted RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	SV2C	Q496J9	727 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	TM4SF20	Q53R12	229 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	CC2D1B	Q5T0F9	858 aa	Known RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	TSHZ1	Q6ZSZ6	1077 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	USP49	Q70CQ1	688 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	GRASP	Q7Z6J2	395 aa	Predicted RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	ADGRA1	Q86SQ6	560 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	TMPRSS12	Q86WS5	348 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	PRPF38A	Q8NAV1	312 aa	Known RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	ZNF564	Q8TBZ8	553 aa	Predicted RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	SETD7	Q8WTS6	366 aa	Known RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	RNF141	Q8WVD5	230 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	LPIN2	Q92539	896 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	RCC1L	Q96I51	464 aa	Known RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	HEXIM2	Q96MH2	286 aa	Known RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	TTPAL	Q9BTX7	342 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	DUSP23	Q9BVJ7	150 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	CEP41	Q9BYV8	373 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	SSU72	Q9NP77	194 aa	Known RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	PCDH12	Q9NPG4	1184 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	SLC8A2	Q9UPR5	921 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	EMC9	Q9Y3B6	208 aa		4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	PRRC2C	Q9Y520	2896 aa	Known RBP	4.64	□□□□□ -1.67
UBR4-215	ENST00000492606	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	ARNTL	O00327	626 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	PIK3R2	O00459	728 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	MTSS1	O43312	755 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	HNRNPR	O43390	633 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	DNAJC6	O75061	913 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	RFPL3	O75679	317 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	PRKCG	P05129	697 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	SERPINF2	P08697	491 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	ITGB5	P18084	799 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	GNLY	P22749	145 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	FCAR	P24071	287 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	MAP4	P27816	1152 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	ADORA1	P30542	326 aa		4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	CSTF2	P33240	577 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
UBR4-215	ENST00000492606	ADM	P35318	185 aa		4.63	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms