RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ING5Q8WYH8 240 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 TCEAL4Q96EI5 215 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ZFP37Q9Y6Q3 630 aaPredicted RBP17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 NOTCH4Q99466 2003 aa17.33■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ATP8B3O60423 1300 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CILPO75339 1184 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 MICAL2O94851 1124 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 FGF19O95750 216 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CEBPBP17676 345 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 TRIM21P19474 475 aaKnown RBP17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CCR2P41597 374 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 TYRO3Q06418 890 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 ORC1Q13415 861 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CUL2Q13617 745 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 TAF12Q16514 161 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 DDR2Q16832 855 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 SDHAF4Q5VUM1 108 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 SCN4BQ8IWT1 228 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 NPAS3Q8IXF0 933 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CRYBG2Q8N1P7 616 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 TTC39CQ8N584 583 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 GPR152Q8TDT2 470 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 FGF13Q92913 245 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 KHSRPQ92945 711 aaKnown RBP eCLIP17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 NT5C1BQ96P26 610 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 ARID3AQ99856 593 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 NT5C1AQ9BXI3 368 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 LRRC3Q9BY71 257 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 B3GNT5Q9BYG0 378 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 ELOVL4Q9GZR5 314 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 DNAI2Q9GZS0 605 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 FAM124BQ9H5Z6 455 aaPredicted RBP17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 ZNF334Q9HCZ1 680 aaPredicted RBP17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 LIMD1Q9UGP4 676 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 MUTYHQ9UIF7 546 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 NFE2L3Q9Y4A8 694 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 VCANP13611 3396 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 C5orf42Q9H799 3197 aa17.33■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 PTPRDP23468 1912 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CLDN5O00501 218 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 TRIM66O15016 1216 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CSH1P0DML2 217 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CSH2P0DML3 217 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 LAMP2P13473 410 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 TBXAS1P24557 533 aaPredicted RBP17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 GRIK1P39086 918 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 LRMPQ12912 555 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 LMO3Q8TAP4 145 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 WHAMMQ8TF30 809 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 TWNKQ96RR1 684 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 MED10Q9BTT4 135 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 ZNF518BQ9C0D4 1074 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CISHQ9NSE2 258 aa17.32■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 DOCK6Q96HP0 2047 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 KCNJ18B7U540 433 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 MOSPD3O75425 235 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 ANXA13P27216 316 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 YWHAEP62258 255 aaKnown RBP17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 KCNJ12Q14500 433 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 MAN2A1Q16706 1144 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 PTPN21Q16825 1174 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 HSP90AA4PQ58FG1 418 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 FAM35AQ86V20 835 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 EHBP1Q8NDI1 1231 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 STKLD1Q8NE28 680 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 SHKBP1Q8TBC3 707 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CEP295NLQ96MC4 621 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 GCNAQ96QF7 691 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 INTS2Q9H0H0 1204 aaKnown RBP17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 SAMSN1Q9NSI8 373 aaKnown RBP17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 GDE1Q9NZC3 331 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 GCNT4Q9P109 453 aa17.31■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 A0A1W2PRU2 124 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 SLC38A8A6NNN8 435 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 NRG2O14511 850 aaPredicted RBP17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 DCXO43602 365 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 NOL4O94818 638 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 LETM1O95202 739 aaPredicted RBP17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 ASGR2P07307 311 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CCDC130P13994 396 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 HMGA1P17096 107 aaKnown RBP17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 GJA1P17302 382 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 GABRR2P28476 465 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 CDC25CP30307 473 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 MYL5Q02045 173 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 MTMR3Q13615 1198 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 TEAD2Q15562 447 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 ZNF394Q53GI3 561 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 GAREM2Q75VX8 874 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 FUKQ8N0W3 1084 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 PPM1KQ8N3J5 372 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 C12orf29Q8N999 325 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 MCRS1Q96EZ8 462 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 SMARCD1Q96GM5 515 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 SPATA17Q96L03 361 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 C8orf48Q96LL4 319 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 TUBGCP2Q9BSJ2 902 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 KCNK12Q9HB15 430 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 FAM49BQ9NUQ9 324 aa17.3■□□□□ 0.36
MSH5-SAPCD1-206ENST00000491552 IGSF9Q9P2J2 1179 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms