RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 DDX47Q9H0S4 455 aaKnown RBP12.87□□□□□ -0.35
HDAC6-230ENST00000488543 CARD9Q9H257 536 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 NEUROG2Q9H2A3 272 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 LRRC4CQ9HCJ2 640 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 GDF3Q9NR23 364 aa12.87□□□□□ -0.35
HDAC6-230ENST00000488543 TET1Q8NFU7 2136 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 SELPP16109 830 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 ATF7P17544 494 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-230ENST00000488543 CTNNA2P26232 953 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 CORO7P57737 925 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 HLTFQ14527 1009 aaKnown RBP eCLIP12.86□□□□□ -0.35
HDAC6-230ENST00000488543 CFAP58Q5T655 872 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 PPP1R2P3Q6NXS1 205 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 EMBQ6PCB8 327 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 ADAT2Q7Z6V5 191 aaKnown RBP12.86□□□□□ -0.35
HDAC6-230ENST00000488543 IFT20Q8IY31 132 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 CAVIN3Q969G5 261 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 RNPC3Q96LT9 517 aaKnown RBP12.86□□□□□ -0.35
HDAC6-230ENST00000488543 ANAPC7Q9UJX3 599 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 TCRBV5S1A1TA0A578 114 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 EIF3HO15372 352 aaKnown RBP eCLIP12.86□□□□□ -0.351e-6■■■□□ 17.8
HDAC6-230ENST00000488543 COL6A1P12109 1028 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 P4HA1P13674 534 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 KCNE1P15382 129 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 FLT3P36888 993 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 MAMLD1Q13495 774 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 TCTN1Q2MV58 587 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 LIN9Q5TKA1 542 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 TMEM35BQ8NCS4 154 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 BEST2Q8NFU1 509 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 LINC01599Q8WXQ3 324 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 WNT8AQ9H1J5 351 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 ATP11BQ9Y2G3 1177 aa12.86□□□□□ -0.35
HDAC6-230ENST00000488543 A0A0U1RQF3 1178 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 GOLGA8KD6RF30 607 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 GJB6O95452 261 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 CD19P15391 556 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 HPDP32754 393 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-230ENST00000488543 CYP2C18P33260 490 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 CTNNA1P35221 906 aaKnown RBP12.85□□□□□ -0.35
HDAC6-230ENST00000488543 ZNF211Q13398 564 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-230ENST00000488543 PKN2Q16513 984 aaKnown RBP12.85□□□□□ -0.35
HDAC6-230ENST00000488543 C9orf57Q5W0N0 161 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 AADACL2Q6P093 401 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 MAATS1Q7Z4T9 603 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 DBF4BQ8NFT6 615 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 TMEM176AQ96HP8 235 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 ZNF518BQ9C0D4 1074 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 FAM107BQ9H098 131 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 CYTH4Q9UIA0 394 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 NME7Q9Y5B8 376 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 ARL5CA6NH57 179 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 OPA1O60313 960 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 CAND2O75155 1236 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 TNNC1P63316 161 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 ANKRD33Q7Z3H0 272 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 LRRC52Q8N7C0 313 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 LHX5Q9H2C1 402 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 HIPK3Q9H422 1215 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 FAM124BQ9H5Z6 455 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-230ENST00000488543 BARX2Q9UMQ3 279 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-230ENST00000488543 UBQLN1Q9UMX0 589 aaKnown RBP12.85□□□□□ -0.35
HDAC6-230ENST00000488543 PLAAQ9Y263 795 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 PCDHA3Q9Y5H8 950 aa12.85□□□□□ -0.35
HDAC6-230ENST00000488543 PIRO00625 290 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 CYP3A5P20815 502 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 NDST1P52848 882 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 SEC24CP53992 1094 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 BFSP2Q13515 415 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 GLE1Q53GS7 698 aaKnown RBP12.84□□□□□ -0.35
HDAC6-230ENST00000488543 IQCKQ8N0W5 287 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 UBL4BQ8N7F7 174 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 TRIM31Q9BZY9 425 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 DCDC2CA8MYV0 355 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 MED7O43513 233 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 SPOPO43791 374 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 PROSCO94903 275 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 POMCP01189 267 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 FGGP02679 453 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 CALB1P05937 261 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 ECHS1P30084 290 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 MAGEA9P43362 315 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 SCNN1GP51170 649 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 MYO1EQ12965 1108 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 LRRC26Q2I0M4 334 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 CEP85LQ5SZL2 805 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 MRPL10Q7Z7H8 261 aaKnown RBP12.84□□□□□ -0.35
HDAC6-230ENST00000488543 MICALL1Q8N3F8 863 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 RUBCNQ92622 972 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 TSPAN18Q96SJ8 248 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 MRPL45Q9BRJ2 306 aaKnown RBP12.84□□□□□ -0.35
HDAC6-230ENST00000488543 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.84□□□□□ -0.35
HDAC6-230ENST00000488543 NR2E1Q9Y466 385 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 SQORQ9Y6N5 450 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 FAM169AQ9Y6X4 670 aa12.84□□□□□ -0.35
HDAC6-230ENST00000488543 O00370 1275 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 SPTLC1O15269 473 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 TLR3O15455 904 aaKnown RBP12.83□□□□□ -0.36
HDAC6-230ENST00000488543 ZNF623O75123 536 aa12.83□□□□□ -0.36
HDAC6-230ENST00000488543 MICAL2O94851 1124 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms