RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 LIMS2Q7Z4I7 341 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 CEP57L1Q8IYX8 460 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 XXYLT1Q8NBI6 393 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 SUMF1Q8NBK3 374 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 TTC8Q8TAM2 541 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 NELL1Q92832 810 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 FUBP3Q96I24 572 aaKnown RBP eCLIP24.22■■□□□ 1.47
PTPN4-211ENST00000488279 SLC39A2Q9NP94 309 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 CGNQ9P2M7 1197 aaKnown RBP24.22■■□□□ 1.47
PTPN4-211ENST00000488279 TCHHQ07283 1943 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 EP300Q09472 2414 aaPredicted RBP24.21■■□□□ 1.47
PTPN4-211ENST00000488279 CTHP32929 405 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 CCR3P51677 355 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 NRLP54845 237 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 CUL4BQ13620 913 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 TXNDC8Q6A555 127 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 FAM171BQ6P995 826 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 C4orf50Q6ZRC1 276 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 MON1AQ86VX9 555 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 CCDC127Q96BQ5 260 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 MMS19Q96T76 1030 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 CDH9Q9ULB4 789 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 GVINP1Q7Z2Y8 2422 aa24.21■■□□□ 1.47
PTPN4-211ENST00000488279 HCRTO43612 131 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 NOL4O94818 638 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 LMO2P25791 158 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 TNK2Q07912 1038 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 CYP24A1Q07973 514 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 PSMD6Q15008 389 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 KNOP1Q1ED39 458 aaKnown RBP24.2■■□□□ 1.46
PTPN4-211ENST00000488279 BMT2Q1RMZ1 405 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 ITPRIPL2Q3MIP1 535 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 SCN4BQ8IWT1 228 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 STKLD1Q8NE28 680 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 KBTBD7Q8WVZ9 684 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 TRMT2BQ96GJ1 504 aaKnown RBP24.2■■□□□ 1.46
PTPN4-211ENST00000488279 MYRFLQ96LU7 910 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 GKN1Q9NS71 199 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 TDP1Q9NUW8 608 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 MAGEC2Q9UBF1 373 aaPredicted RBP24.2■■□□□ 1.46
PTPN4-211ENST00000488279 DMXL1Q9Y485 3027 aa24.2■■□□□ 1.46
PTPN4-211ENST00000488279 ATP2C2O75185 946 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 CST3P01034 146 aaPredicted RBP24.19■■□□□ 1.46
PTPN4-211ENST00000488279 SLFN14P0C7P3 912 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 MAGEA11P43364 429 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 CXCL12P48061 93 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 MAPRE1Q15691 268 aaKnown RBP24.19■■□□□ 1.46
PTPN4-211ENST00000488279 CCDC142Q17RM4 750 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 DGKKQ5KSL6 1271 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 TXNDC11Q6PKC3 985 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 USP13Q92995 863 aaPredicted RBP24.19■■□□□ 1.46
PTPN4-211ENST00000488279 CGRRF1Q99675 332 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 SYT15Q9BQS2 421 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 CCL26Q9Y258 94 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 TICRRQ7Z2Z1 1910 aa24.19■■□□□ 1.46
PTPN4-211ENST00000488279 LILRB5O75023 590 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 PDGFRBP09619 1106 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 WARSP23381 471 aaKnown RBP24.18■■□□□ 1.46
PTPN4-211ENST00000488279 PSMC1P62191 440 aaKnown RBP24.18■■□□□ 1.46
PTPN4-211ENST00000488279 C12orf56Q8IXR9 622 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 KIAA2013Q8IYS2 634 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 SPEM1Q8N4L4 309 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 FAM83CQ9BQN1 747 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 KIF9Q9HAQ2 790 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 SERTAD1Q9UHV2 236 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 SPTBN4Q9H254 2564 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 DCHS1Q96JQ0 3298 aa24.18■■□□□ 1.46
PTPN4-211ENST00000488279 EXOC3O60645 756 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 FAM163BP0C2L3 166 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 TDGF1P13385 188 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 GNL1P36915 607 aaPredicted RBP24.17■■□□□ 1.46
PTPN4-211ENST00000488279 ID4P47928 161 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 TRPC3Q13507 836 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 PON2Q15165 354 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 CC2D1AQ6P1N0 951 aaPredicted RBP24.17■■□□□ 1.46
PTPN4-211ENST00000488279 VSTM1Q6UX27 236 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 GRAMD1CQ8IYS0 662 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 DCLK2Q8N568 766 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 FSIP1Q8NA03 581 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 GOLGA5Q8TBA6 731 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 SNX25Q9H3E2 840 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 RBM12Q9NTZ6 932 aaKnown RBP24.17■■□□□ 1.46
PTPN4-211ENST00000488279 COL4A2P08572 1712 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 PATJQ8NI35 1801 aa24.17■■□□□ 1.46
PTPN4-211ENST00000488279 GRIK1P39086 918 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 CYP27A1Q02318 531 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 RUNX3Q13761 415 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 GAS6Q14393 721 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 ZNF268Q14587 947 aaPredicted RBP24.16■■□□□ 1.46
PTPN4-211ENST00000488279 WDR72Q3MJ13 1102 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 MYCBPAPQ8TBZ2 947 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 ZNF516Q92618 1163 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 SECISBP2LQ93073 1101 aaKnown RBP24.16■■□□□ 1.46
PTPN4-211ENST00000488279 MYLPFQ96A32 169 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 PAGE5Q96GU1 130 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 EPC1Q9H2F5 836 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 TRPC7Q9HCX4 862 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 CRTAC1Q9NQ79 661 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 NCDNQ9UBB6 729 aa24.16■■□□□ 1.46
PTPN4-211ENST00000488279 TACC1O75410 805 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms