RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, human

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-208	ENST00000485627	TRIP11	Q15643	1979 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CTAGE15	A4D2H0	777 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	MIF4GD	A9UHW6	222 aa	Known RBP	10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	TRAPPC3	O43617	180 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	SRGAP2	O75044	1071 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CXCL10	P02778	98 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CTAGE8	P0CG41	777 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	SETSIP	P0DME0	302 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	FGFR1	P11362	822 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	COL9A1	P20849	921 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	PCSK1	P29120	753 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	OR1G1	P47890	313 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	BCAT1	P54687	386 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	PSMC1	P62191	440 aa	Known RBP	10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	TUBB4B	P68371	445 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	IKBKE	Q14164	716 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	GPNMB	Q14956	572 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CLLU1OS	Q5K130	101 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	PLEKHA7	Q6IQ23	1121 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CNKSR3	Q6P9H4	555 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	LIMS2	Q7Z4I7	341 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CTAGE6	Q86UF2	777 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	NT5DC3	Q86UY8	548 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	NPAS4	Q8IUM7	802 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CTAGE4	Q8IX94	777 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	THEM5	Q8N1Q8	247 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	C12orf29	Q8N999	325 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	B3GALNT2	Q8NCR0	500 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	UBA3	Q8TBC4	463 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	SPATA18	Q8TC71	538 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	KBTBD7	Q8WVZ9	684 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	RABGGTA	Q92696	567 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	C18orf8	Q96DM3	657 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	PBK	Q96KB5	322 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	PSMB7	Q99436	277 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CDX2	Q99626	313 aa	Predicted RBP	10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	MED10	Q9BTT4	135 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	TLR10	Q9BXR5	811 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	MRPL9	Q9BYD2	267 aa	Known RBP	10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	DPEP3	Q9H4B8	488 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	PRDM5	Q9NQX1	630 aa	Predicted RBP	10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	DDX43	Q9NXZ2	648 aa	Known RBP	10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CACNG4	Q9UBN1	327 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	RNF14	Q9UBS8	474 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	CHORDC1	Q9UHD1	332 aa	Predicted RBP	10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	TBX21	Q9UL17	535 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	PACSIN2	Q9UNF0	486 aa	Predicted RBP	10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	COG5	Q9UP83	839 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	ALG6	Q9Y672	507 aa		10.08	□□□□□ -0.8
CTSA-208	ENST00000485627	PDCD11	Q14690	1871 aa	Known RBP	10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	EFCAB8	A8MWE9	144 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	CES2	O00748	559 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	KCNK3	O14649	394 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	RAG1	P15918	1043 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	DES	P17661	470 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	PTPN1	P18031	435 aa	Known RBP	10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	LMO2	P25791	158 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	ADORA2B	P29275	332 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	CXCR5	P32302	372 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	SLC1A1	P43005	524 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	GPD2	P43304	727 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	BST2	Q10589	180 aa	Known RBP	10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	PTP4A2	Q12974	167 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	PDCL	Q13371	301 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	MAMLD1	Q13495	774 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	ZNF268	Q14587	947 aa	Predicted RBP	10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	PTPRO	Q16827	1216 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	CFAP221	Q4G0U5	840 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	PTPN20	Q4JDL3	420 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	PAN2	Q504Q3	1202 aa	Known RBP	10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	TIGD5	Q53EQ6	642 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	C2CD6	Q53TS8	623 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	OSTM1	Q86WC4	334 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	WDTC1	Q8N5D0	677 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	MAFA	Q8NHW3	353 aa	Predicted RBP	10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	FEZF2	Q8TBJ5	459 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	MYLIP	Q8WY64	445 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	UBXN4	Q92575	508 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	GOLGA1	Q92805	767 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	MS4A3	Q96HJ5	214 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	RPGRIP1	Q96KN7	1286 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	SYT15	Q9BQS2	421 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	PAAF1	Q9BRP4	392 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	WNT8A	Q9H1J5	351 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	GOLPH3	Q9H4A6	298 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	ABCB6	Q9NP58	842 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	TBC1D13	Q9NVG8	400 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	IP6K2	Q9UHH9	426 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	CDH9	Q9ULB4	789 aa		10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	TIMM13	Q9Y5L4	95 aa	Predicted RBP	10.07	□□□□□ -0.8
CTSA-208	ENST00000485627	SCN1A	P35498	2009 aa		10.06	□□□□□ -0.8
CTSA-208	ENST00000485627	TBKBP1	A7MCY6	615 aa		10.06	□□□□□ -0.8
CTSA-208	ENST00000485627	GOLGA8S	H3BPF8	625 aa		10.06	□□□□□ -0.8
CTSA-208	ENST00000485627	GABRD	O14764	452 aa		10.06	□□□□□ -0.8
CTSA-208	ENST00000485627	TADA2A	O75478	443 aa		10.06	□□□□□ -0.8
CTSA-208	ENST00000485627	DDHD2	O94830	711 aa		10.06	□□□□□ -0.8
CTSA-208	ENST00000485627	TIMP1	P01033	207 aa		10.06	□□□□□ -0.8

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