RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 N4BP2L1Q5TBK1 243 aaPredicted RBP14□□□□□ -0.17
HDAC6-227ENST00000485102 BRAPQ7Z569 592 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 BRSK2Q8IWQ3 736 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 PDCL2Q8N4E4 241 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 KIAA1958Q8N8K9 716 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 CACTINQ8WUQ7 758 aaKnown RBP14□□□□□ -0.17
HDAC6-227ENST00000485102 OSCP1Q8WVF1 389 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 FUBP3Q96I24 572 aaKnown RBP eCLIP14□□□□□ -0.17
HDAC6-227ENST00000485102 CEP295NLQ96MC4 621 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 PI4K2AQ9BTU6 479 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 DUSP15Q9H1R2 295 aaPredicted RBP14□□□□□ -0.17
HDAC6-227ENST00000485102 ZHX3Q9H4I2 956 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 RXFP3Q9NSD7 469 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 L1RE1Q9UN81 338 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 EXOC7Q9UPT5 735 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 FAM208BQ5VWN6 2430 aa14□□□□□ -0.17
HDAC6-227ENST00000485102 GON4LQ3T8J9 2241 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 CACNA1GO43497 2377 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 GABRDO14764 452 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 HUS1O60921 280 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 USP17L7P0C7H9 530 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 ARSAP15289 507 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 PFKLP17858 780 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 MPLP40238 635 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 PXNP49023 591 aaPredicted RBP13.99□□□□□ -0.17
HDAC6-227ENST00000485102 MYL7Q01449 175 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 MTF1Q14872 753 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 ZNF77Q15935 545 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 INTS6LQ5JSJ4 861 aaKnown RBP13.99□□□□□ -0.17
HDAC6-227ENST00000485102 DPH6Q7L8W6 267 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 LIMS2Q7Z4I7 341 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 CPA6Q8N4T0 437 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 C1orf127Q8N9H9 656 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 EZH1Q92800 747 aaPredicted RBP13.99□□□□□ -0.17
HDAC6-227ENST00000485102 ATP2A3Q93084 1043 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 ACDQ96AP0 544 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 CHAMP1Q96JM3 812 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 DDX43Q9NXZ2 648 aaKnown RBP13.99□□□□□ -0.17
HDAC6-227ENST00000485102 GCNT4Q9P109 453 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 STK17AQ9UEE5 414 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 LAMA1P25391 3075 aa13.99□□□□□ -0.17
HDAC6-227ENST00000485102 NUP205Q92621 2012 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 PCNX2A6NKB5 2137 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 RHOBTB1O94844 696 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 APBB3O95704 486 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 GAP43P17677 238 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 GARTP22102 1010 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 CYP2F1P24903 491 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 POLR2BP30876 1174 aaKnown RBP13.98□□□□□ -0.17
HDAC6-227ENST00000485102 MAGEA11P43364 429 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 LHX1P48742 406 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 GPR15P49685 360 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 USP4Q13107 963 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 NR1H3Q13133 447 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 ELF2Q15723 593 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 DDR2Q16832 855 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 EML3Q32P44 896 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 FAM171BQ6P995 826 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 C11orf74Q86VG3 221 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 SFR1Q86XK3 245 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 TOP6BLQ8N6T0 577 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 RASSF8Q8NHQ8 419 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 CD101Q93033 1021 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 DNAJC19Q96DA6 116 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 OLFML3Q9NRN5 406 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 DUS2Q9NX74 493 aaKnown RBP13.98□□□□□ -0.17
HDAC6-227ENST00000485102 ITGA11Q9UKX5 1188 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 MAGED2Q9UNF1 606 aaPredicted RBP13.98□□□□□ -0.17
HDAC6-227ENST00000485102 AGAP1Q9UPQ3 857 aa13.98□□□□□ -0.17
HDAC6-227ENST00000485102 TRAV19A0A0A6YYK7 116 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 BCLAF3A2AJT9 711 aaKnown RBP13.97□□□□□ -0.17
HDAC6-227ENST00000485102 KCNK5O95279 499 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 ITGB3P05106 788 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 PCSK1P29120 753 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 CDR1P51861 262 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 WNT7BP56706 349 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 TFAMQ00059 246 aaKnown RBP13.97□□□□□ -0.17
HDAC6-227ENST00000485102 KCNA1Q09470 495 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 ALCAMQ13740 583 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 DMC1Q14565 340 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 SF3A1Q15459 793 aaKnown RBP13.97□□□□□ -0.17
HDAC6-227ENST00000485102 L1TD1Q5T7N2 865 aaKnown RBP13.97□□□□□ -0.17
HDAC6-227ENST00000485102 LARP1BQ659C4 914 aaKnown RBP13.97□□□□□ -0.17
HDAC6-227ENST00000485102 FSIP1Q8NA03 581 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 RPLP0P6Q8NHW5 317 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 SPATA17Q96L03 361 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 ACCSQ96QU6 501 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 SLC22A12Q96S37 553 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 CYP2S1Q96SQ9 504 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 IKZF4Q9H2S9 585 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 GTF3C4Q9UKN8 822 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 ARHGAP26Q9UNA1 814 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 SMC3Q9UQE7 1217 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 PCDHB13Q9Y5F0 798 aa13.97□□□□□ -0.17
HDAC6-227ENST00000485102 MYO16Q9Y6X6 1858 aa13.96□□□□□ -0.17
HDAC6-227ENST00000485102 FRMD3A2A2Y4 597 aa13.96□□□□□ -0.17
HDAC6-227ENST00000485102 IFNAR2P48551 515 aa13.96□□□□□ -0.17
HDAC6-227ENST00000485102 PDE6CP51160 858 aa13.96□□□□□ -0.17
HDAC6-227ENST00000485102 RBP5P82980 135 aa13.96□□□□□ -0.17
HDAC6-227ENST00000485102 CCDC6Q16204 474 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms