RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 A1CFQ9NQ94 594 aaKnown RBP7.35□□□□□ -1.23
USP40-213ENST00000483216 STK32BQ9NY57 414 aa7.35□□□□□ -1.23
USP40-213ENST00000483216 CCDC151A5D8V7 595 aa7.34□□□□□ -1.23
USP40-213ENST00000483216 TRIM43BA6NCK2 446 aa7.34□□□□□ -1.23
USP40-213ENST00000483216 RPL17P18621 184 aaKnown RBP7.34□□□□□ -1.23
USP40-213ENST00000483216 FMO1Q01740 532 aa7.34□□□□□ -1.23
USP40-213ENST00000483216 KAZNQ674X7 775 aa7.34□□□□□ -1.23
USP40-213ENST00000483216 MICU3Q86XE3 530 aa7.34□□□□□ -1.23
USP40-213ENST00000483216 TRIM43Q96BQ3 446 aaPredicted RBP7.34□□□□□ -1.23
USP40-213ENST00000483216 ALG8Q9BVK2 526 aa7.34□□□□□ -1.23
USP40-213ENST00000483216 AFF4Q9UHB7 1163 aaKnown RBP7.34□□□□□ -1.23
USP40-213ENST00000483216 ADGRA2Q96PE1 1338 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 CXCR5P32302 372 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 RARRES1P49788 294 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 TXNRD1Q16881 649 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 ERCC6LQ2NKX8 1250 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 PRR16Q569H4 304 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 DTX2Q86UW9 622 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 KRT78Q8N1N4 520 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 TFAP2BQ92481 460 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 CCDC136Q96JN2 1154 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 BTBD1Q9H0C5 482 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 NUP62CLQ9H1M0 184 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 ZNF287Q9HBT7 754 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 SACM1LQ9NTJ5 587 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 OGDHLQ9ULD0 1010 aa7.33□□□□□ -1.24
USP40-213ENST00000483216 MBD3L4A6NDZ8 208 aaPredicted RBP7.32□□□□□ -1.24
USP40-213ENST00000483216 MBD3L3A6NE82 208 aaPredicted RBP7.32□□□□□ -1.24
USP40-213ENST00000483216 VWC2LB2RUY7 222 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 ADM5C9JUS6 153 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 MAP4K4O95819 1239 aaPredicted RBP7.32□□□□□ -1.24
USP40-213ENST00000483216 CHRM2P08172 466 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 PLA2G5P39877 138 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 SIM1P81133 766 aaPredicted RBP7.32□□□□□ -1.24
USP40-213ENST00000483216 E2F2Q14209 437 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 MGAT5BQ3V5L5 792 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 ARHGAP40Q5TG30 622 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 MPP5Q8N3R9 675 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 PBKQ96KB5 322 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 MSLNLQ96KJ4 702 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 SARGQ9BW04 601 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 MS4A7Q9GZW8 240 aaPredicted RBP7.32□□□□□ -1.24
USP40-213ENST00000483216 SLITRK6Q9H5Y7 841 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 SYNPO2LQ9H987 977 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 RGS17Q9UGC6 210 aaPredicted RBP7.32□□□□□ -1.24
USP40-213ENST00000483216 NDRG4Q9ULP0 352 aaKnown RBP7.32□□□□□ -1.24
USP40-213ENST00000483216 SSX2IPQ9Y2D8 614 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 PCDHGB6Q9Y5F9 930 aa7.32□□□□□ -1.24
USP40-213ENST00000483216 TMEM233B4DJY2 109 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 PPM1DO15297 605 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 RHOP08100 348 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 GRIA3P42263 894 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 MAPK10P53779 464 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 TEDDM1Q5T9Z0 273 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 DCAF12L1Q5VU92 463 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 SESTD1Q86VW0 696 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 ZNF280BQ86YH2 543 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 CAGE1Q8TC20 777 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 FKBP10Q96AY3 582 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 KRTAP4-5Q9BYR2 181 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 SERHLQ9NQF3 203 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 XPNPEP3Q9NQH7 507 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 ZSCAN32Q9NX65 697 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 EHD3Q9NZN3 535 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 COL20A1Q9P218 1284 aa7.31□□□□□ -1.24
USP40-213ENST00000483216 PYCARD-AS1I3L0S3 204 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 ORC4O43929 436 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 TRIM27P14373 513 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 ZKSCAN1P17029 563 aaPredicted RBP7.3□□□□□ -1.24
USP40-213ENST00000483216 KLRC1P26715 233 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 GNALP38405 381 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 DGKEP52429 567 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 MYO1EQ12965 1108 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 KRTAP15-1Q3LI76 137 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 PLA1AQ53H76 456 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 C3orf38Q5JPI3 329 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 RGS7BPQ6MZT1 257 aaPredicted RBP7.3□□□□□ -1.24
USP40-213ENST00000483216 PEG10Q86TG7 708 aaKnown RBP7.3□□□□□ -1.24
USP40-213ENST00000483216 SIMC1Q8NDZ2 872 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 OR56A3Q8NH54 315 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 PHKBQ93100 1093 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 RFKQ969G6 155 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 SPSB4Q96A44 273 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 PCGF6Q9BYE7 350 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 SERTAD3Q9UJW9 196 aa7.3□□□□□ -1.24
USP40-213ENST00000483216 hCG_1984214I3L0E3 225 aa7.29□□□□□ -1.24
USP40-213ENST00000483216 TLR5O60602 858 aa7.29□□□□□ -1.24
USP40-213ENST00000483216 KRT17Q04695 432 aa7.29□□□□□ -1.24
USP40-213ENST00000483216 TBCCQ15814 346 aa7.29□□□□□ -1.24
USP40-213ENST00000483216 ZIK1Q3SY52 487 aaPredicted RBP7.29□□□□□ -1.24
USP40-213ENST00000483216 ATRIPQ8WXE1 791 aa7.29□□□□□ -1.24
USP40-213ENST00000483216 RAPGEF4Q8WZA2 1011 aa7.29□□□□□ -1.24
USP40-213ENST00000483216 MRPS17Q9Y2R5 130 aaKnown RBP7.29□□□□□ -1.24
USP40-213ENST00000483216 DCAF1Q9Y4B6 1507 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 FOXN3O00409 490 aaPredicted RBP7.28□□□□□ -1.24
USP40-213ENST00000483216 KCNA3P22001 575 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 CACNA2D1P54289 1103 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 RPS16P62249 146 aaKnown RBP7.28□□□□□ -1.24
USP40-213ENST00000483216 BMPR2Q13873 1038 aa7.28□□□□□ -1.24
USP40-213ENST00000483216 COBLL1Q53SF7 1204 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms