RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SSTR3P32745 418 aaPredicted RBP12.99□□□□□ -0.33
SDC1-206ENST00000482879 GSDMDP57764 484 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 SMARCB1Q12824 385 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 GRIN2CQ14957 1233 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 STILQ15468 1287 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 CNGA2Q16280 664 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 TAF3Q5VWG9 929 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 TPGS2Q68CL5 300 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 ARHGAP17Q68EM7 881 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 RNF19BQ6ZMZ0 732 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 CCDC186Q7Z3E2 898 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 NOP9Q86U38 636 aaKnown RBP12.99□□□□□ -0.33
SDC1-206ENST00000482879 SPATA2LQ8IUW3 424 aaPredicted RBP12.99□□□□□ -0.33
SDC1-206ENST00000482879 ATAD1Q8NBU5 361 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 ZNF461Q8TAF7 563 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 SLC2A14Q8TDB8 520 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 EPS8L1Q8TE68 723 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 HNRNPABQ99729 332 aaKnown RBP12.99□□□□□ -0.33
SDC1-206ENST00000482879 ZSWIM1Q9BR11 485 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 PDCL3Q9H2J4 239 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 HAUS4Q9H6D7 363 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 ABI2Q9NYB9 513 aaPredicted RBP12.99□□□□□ -0.33
SDC1-206ENST00000482879 CHD7Q9P2D1 2997 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 PCDHB5Q9Y5E4 795 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 BZW2Q9Y6E2 419 aaKnown RBP12.99□□□□□ -0.33
SDC1-206ENST00000482879 MTMR11A4FU01 709 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 O00370 1275 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 PER2O15055 1255 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 CLASP2O75122 1294 aaKnown RBP12.98□□□□□ -0.33
SDC1-206ENST00000482879 ABLIM3O94929 683 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 BDNFP23560 247 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 PRKCIP41743 596 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 ADCY1Q08828 1119 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 GOLGA7BQ2TAP0 167 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 TDRD12Q587J7 1177 aaKnown RBP12.98□□□□□ -0.33
SDC1-206ENST00000482879 HABP4Q5JVS0 413 aaKnown RBP12.98□□□□□ -0.33
SDC1-206ENST00000482879 HGSNATQ68CP4 663 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 WDR59Q6PJI9 974 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 LCLAT1Q6UWP7 414 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 PAQR9Q6ZVX9 377 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 RBM23Q86U06 439 aaKnown RBP12.98□□□□□ -0.33
SDC1-206ENST00000482879 ZNF677Q86XU0 584 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 FUKQ8N0W3 1084 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 SPPL2BQ8TCT7 592 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 C2orf15Q8WU43 125 aaKnown RBP12.98□□□□□ -0.33
SDC1-206ENST00000482879 SLC20A1Q8WUM9 679 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 DDX1Q92499 740 aaKnown RBP12.98□□□□□ -0.33
SDC1-206ENST00000482879 PDLIM2Q96JY6 352 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 FAM161BQ96MY7 647 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 PANX2Q96RD6 677 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 AGPAT1Q99943 283 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 ZNF518BQ9C0D4 1074 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 TLE6Q9H808 572 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 HESX1Q9UBX0 185 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 AFF4Q9UHB7 1163 aaKnown RBP12.98□□□□□ -0.33
SDC1-206ENST00000482879 NOCTQ9UK39 431 aaKnown RBP12.98□□□□□ -0.33
SDC1-206ENST00000482879 TSPAN16Q9UKR8 245 aa12.98□□□□□ -0.33
SDC1-206ENST00000482879 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.98□□□□□ -0.33
SDC1-206ENST00000482879 TGM5O43548 720 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 AP1G2O75843 785 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 MICAL2O94851 1124 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 VNN2O95498 520 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 PTMAP06454 111 aaKnown RBP12.97□□□□□ -0.33
SDC1-206ENST00000482879 MMEP08473 750 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 CFHP08603 1231 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 SPATA31D3P0C874 917 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 ATF2P15336 505 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 CHRNB2P17787 502 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 TNFAIP3P21580 790 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 CYP2F1P24903 491 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 ELF1P32519 619 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 CDR2Q01850 454 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 CCDC173Q0VFZ6 552 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 DUSP4Q13115 394 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 MEA1Q16626 185 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 SPATA31D4Q6ZUB0 917 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 ZNF571Q7Z3V5 609 aaPredicted RBP12.97□□□□□ -0.33
SDC1-206ENST00000482879 ADGRD2Q7Z7M1 963 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 FAM35AQ86V20 835 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 ANKRD52Q8NB46 1076 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 UBA3Q8TBC4 463 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 PPP2R3CQ969Q6 453 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 FUBP3Q96I24 572 aaKnown RBP eCLIP12.97□□□□□ -0.33
SDC1-206ENST00000482879 CHP1Q99653 195 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 RHOBTB2Q9BYZ6 727 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 ABCB6Q9NP58 842 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 SEPT11Q9NVA2 429 aaKnown RBP12.97□□□□□ -0.33
SDC1-206ENST00000482879 LMCD1Q9NZU5 365 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 PCDHGC3Q9UN70 934 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 SLC27A5Q9Y2P5 690 aa12.97□□□□□ -0.33
SDC1-206ENST00000482879 M0QYV0 167 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 SEC24AO95486 1093 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 GLUD1P00367 558 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 PLEKP08567 350 aaPredicted RBP12.96□□□□□ -0.33
SDC1-206ENST00000482879 FAM200BP0CF97 657 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 HAPLN1P10915 354 aaPredicted RBP12.96□□□□□ -0.33
SDC1-206ENST00000482879 EIF4A3P38919 411 aaKnown RBP12.96□□□□□ -0.33
SDC1-206ENST00000482879 GRIK1P39086 918 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 MAGEA11P43364 429 aa12.96□□□□□ -0.33
SDC1-206ENST00000482879 CLCN4P51793 760 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms