RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CUEDC2Q9H467 287 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 PARD6AQ9NPB6 346 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TDP1Q9NUW8 608 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GTF3C4Q9UKN8 822 aa13.16□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 MED19A0JLT2 244 aaPredicted RBP13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SPTLC2O15270 562 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 EIF3DO15371 548 aaKnown RBP eCLIP13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 HCRTO43612 131 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 ACAT1P24752 427 aaKnown RBP13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 LMO2P25791 158 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 HOXC13P31276 330 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CNR2P34972 360 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 MAGEA11P43364 429 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 MYL7Q01449 175 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 DDR2Q16832 855 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 RSPO4Q2I0M5 234 aaPredicted RBP13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SDHAF4Q5VUM1 108 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SHC4Q6S5L8 630 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CBWD2Q8IUF1 395 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 STKLD1Q8NE28 680 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 TTC8Q8TAM2 541 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 C7orf25Q9BPX7 421 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GZF1Q9H116 711 aaPredicted RBP13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 KIF9Q9HAQ2 790 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 THG1LQ9NWX6 298 aaKnown RBP13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GCNT4Q9P109 453 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 NCDNQ9UBB6 729 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 GTF3C3Q9Y5Q9 886 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 SNX9Q9Y5X1 595 aa13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 CNOT1A5YKK6 2376 aaKnown RBP13.15□□□□□ -0.3
MSH5-SAPCD1-205ENST00000476085 MYO16Q9Y6X6 1858 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ZNF233A6NK53 670 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CHURC1-FNTBB4DL54 471 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 LRP3O75074 770 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ATP2C2O75185 946 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 YEATS4O95619 227 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 FAM163BP0C2L3 166 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TCF3P15923 654 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PCSK1P29120 753 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 FNTBP49356 437 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 RPL10AP62906 217 aaKnown RBP13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 BFSP1Q12934 665 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 RUNX3Q13761 415 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 STK38Q15208 465 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SURF1Q15526 300 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TAF12Q16514 161 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 DUOXA2Q1HG44 320 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 LMBRD2Q68DH5 695 aaPredicted RBP13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 LAIR1Q6GTX8 287 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 FSTL4Q6MZW2 842 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PKN3Q6P5Z2 889 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 DGLUCYQ7Z3D6 616 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 LONP2Q86WA8 852 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ADGRF2Q8IZF7 708 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SNX21Q969T3 373 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 HPDLQ96IR7 371 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CEP295NLQ96MC4 621 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 GCNAQ96QF7 691 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SLC22A12Q96S37 553 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 LRRC27Q9C0I9 530 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 KIAA1586Q9HCI6 787 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 FBRSL1Q9HCM7 1045 aaKnown RBP13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CRTAC1Q9NQ79 661 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 HSPBP1Q9NZL4 362 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TFIP11Q9UBB9 837 aaKnown RBP13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 UXTQ9UBK9 157 aaPredicted RBP13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 NME7Q9Y5B8 376 aa13.14□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 HELZP42694 1942 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 PRR5-ARHGAP8B1AHC4 643 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CUTAO60888 179 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CST3P01034 146 aaPredicted RBP13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 RETP07949 1114 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TMEM191BP0C7N4 346 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 WARSP23381 471 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 AVPR1AP37288 418 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ATXN1P54253 815 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SNRPFP62306 86 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ARHGAP8P85298 464 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ZNF77Q15935 545 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TRIM68Q6AZZ1 485 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TRAPPC11Q7Z392 1133 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 WDR49Q8IV35 697 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SCFD1Q8WVM8 642 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ZNF516Q92618 1163 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MRPS31Q92665 395 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SECISBP2LQ93073 1101 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ANKRD36BP1Q96IX9 119 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SPATA17Q96L03 361 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CYP2S1Q96SQ9 504 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 EBF3Q9H4W6 596 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 FOXD4L1Q9NU39 408 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CDH9Q9ULB4 789 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 LAMA1P25391 3075 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 KIAA1549LQ6ZVL6 1849 aa13.13□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 MYOFQ9NZM1 2061 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 CCDC163A0A0D9SF12 145 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 TACC1O75410 805 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 KRT19P08727 400 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 ARSAP15289 507 aa13.12□□□□□ -0.31
MSH5-SAPCD1-205ENST00000476085 SDHBP21912 280 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms